Gene SbBS512_E3334 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSbBS512_E3334 
SymbolrpiA 
ID6270884 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShigella boydii CDC 3083-94 
KingdomBacteria 
Replicon accessionNC_010658 
Strand- 
Start bp3105793 
End bp3106452 
Gene Length660 bp 
Protein Length219 aa 
Translation table11 
GC content53% 
IMG OID641727233 
Productribose-5-phosphate isomerase A 
Protein accessionYP_001881683 
Protein GI187730970 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0120] Ribose 5-phosphate isomerase 
TIGRFAM ID[TIGR00021] ribose 5-phosphate isomerase 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value0.0378639 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACGCAGG ATGAATTGAA AAAAGCAGTA GGATGGGCGG CACTTCAGTA TGTTCAGCCC 
GGCACCATTG TTGGTGTAGG TACAGGTTCC ACCGCCGCAC ACTTTATTGA CGCGCTCGGC 
ACGATGAAAG GCCAGATTGA AGGGGCCGTT TCCAGTTCAG ATGCTTCCAC TGAAAAACTG 
AAAAGCCTCG GCATTCACGT TTTTGATCTC AACGAAGTCG ACAGCCTTGG CATCTACGTT 
GATGGCGCAG ATGAAATCAA CGGCCACATG CAAATGATCA AAGGCGGCGG CGCGGCGCTG 
ACCCGTGAAA AAATCATTGC TTCGGTTGCG GAAAAATTTA TCTGTATTGC CGACGCCTCC 
AAGCAGGTTG ATATTCTGGG TAAATTCCCG CTGCCAGTAG AAGTTATCCC GATGGCACGT 
AGTGCAGTGG CGCGCCAGCT GGTGAAACTG GGCGGTCGTC CGGAATACCG TCAGGGCGTG 
GTGACCGATA ATGGCAACGT GATCCTCGAC GTCCACGGCA TGGAAATCCT TGACCCGATA 
GCGATGGAAA ACGCCATAAA TGCGATTCCT GGCGTGGTGA CTGTTGGCTT GTTTGCTAAC 
CGTGGCGCGG ACGTTGCGCT GATTGGCACA CCTGACGGTG TCAAAACCAT TGTGAAATGA
 
Protein sequence
MTQDELKKAV GWAALQYVQP GTIVGVGTGS TAAHFIDALG TMKGQIEGAV SSSDASTEKL 
KSLGIHVFDL NEVDSLGIYV DGADEINGHM QMIKGGGAAL TREKIIASVA EKFICIADAS 
KQVDILGKFP LPVEVIPMAR SAVARQLVKL GGRPEYRQGV VTDNGNVILD VHGMEILDPI 
AMENAINAIP GVVTVGLFAN RGADVALIGT PDGVKTIVK