Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SbBS512_E3284 |
Symbol | |
ID | 6270714 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shigella boydii CDC 3083-94 |
Kingdom | Bacteria |
Replicon accession | NC_010658 |
Strand | - |
Start bp | 3058210 |
End bp | 3060150 |
Gene Length | 1941 bp |
Protein Length | 646 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 641727190 |
Product | regulatory protein CsrD |
Protein accession | YP_001881643 |
Protein GI | 187731335 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2200] FOG: EAL domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.000365395 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGATTAA CGACGAAATT TTCGGCCTTT GTTACGCTGC TCACCGGGTT AACAATTTTT GTGACTTTGC TGGGCTGTTC GCTAAGTTTC TACAACGCAA TTCAGTATAA GTTTAGTCAT CGCGTTCAGG CGGTGGCGAC GGCGATTGAT ACCCACCTTG TGTCGAATGA CTTCAGCACA TTAAGGCCAC AAATTACCGA ATTAATGATG TCGGCAGATA TCGTTCGTGT AGGCCTGCTC CATGGTGATA AACAGGTTTA TACCCTGGCC AGAAATGGTA GTTATCGTCC GGTTGGCTCC AGCGATCTGT TTCGTGAACT GAGCGTTCCG TTGATAAAGC ATCCGGGGAT GTCGCTGCGT CTGGTTTATC AGGATCCGAT GGGCAACTAT TTCCATTCGT TGATGACCAC CGCGCCGCTC ACGGGGGCGA TTAGCTTTAT CATTGTTATG CTCTTCTTGG CGGTACGCTG GTTACAACGG CAACTTGCCG GGCAAGAATT GCTGGAAACC CGGGCTACTC GTATCTTAAA CGGTGAGCGT GGCTCTAATG TGTTGGGAAC CATCTATGAA TGGCCGCCCA GAACCAGCAG TGCGCTGGAT ACGCTGCTTC GTGAAATTCA GAACGCACGC GAACAACACA GCCGTCTTGA TACGCTGATC CGCTCTTATG CCGCCCAGGA CGTGAAAACC GGCCTCAATA ACCGACTCTT TTTCGATAAT CAGTTAGCAA CGTTACTGGA AGATCAGGAG AAAGTAGGTA CCCACGGGAT CGTGATGATG ATTCGTCTGC CGGATTTCAA TATGTTGAGC GATACTTGGG GGCACAGCCA GGTTGAAGAA CAGTTCTTCA CTCTGACGAA TCTGCTGTCG ACATTTATGA TGCGCTACCC TGGCGCACTG CTGGCGCGTT ACCACCGCAG TGATTTTGCT GCGCTGTTAC CGCACCGGAC GTTAAAAGAG GCAGAGAGCA TCGCCGGTCA GTTAATCAAA GCCGTCGATA CCTTGCCGAA CAATAAAATG CTCGATCGCG ACGATATGAT CCACATTGGT ATCTGCGCCT GGCGTAGTGG TCAGGATACC GAGCAGGTAA TGGAACATGC AGAGTCTGCC ACGCGTAATG CGGGATTGCA GGGCGGCAAT AGCTGGGCTA TTTACGATGA CTCGTTGCCT GAAAAAGGAC GCGGTAATGT TCGCTGGCGT ACGCTTATCG AGCAAATGCT CAGTCGCGGC GGCCCGCGCC TTTATCAAAA ACCGGCGGTT ACTCGCGAAG GTCAGGTTCA TCATCGCGAA CTCATGTGCC GCATCTTCGA TGGTAATGAA GAGGTTAGCT CGGCGGAGTA TATGCCGATG GTCTTGCAGT TTGGCTTATC GGAAGAGTAT GACCGTCTGC AAATCAGCCG TCTTATTCCA CTATTGCGGT ACTGGCCAGA GGAAAATCTG GCGATTCAGG TTACCGTTGA GTCGCTGATT CGCCCGCGTT TTCAGCGTTG GCTGCGCGAT ACGTTAATGC AATGTGAAAA ATCACAACGA AAACGCATAA TTATTGAACT TGCAGAGGCC GATGTAGGTC AACATATCAG TCGTTTACAA CCTGTTATTC GTTTAGTGAA TGCTTTAGGG GTACGGGTAG CCGTCAACCA GGCTGGTTTG ACGCTGGTAA GCACCAGTTG GATCAAAGAA CTTAATGTTG AGTTACTCAA GCTCCATCCG GGGCTGGTCA GAAACATTGA GAAGCGAACG GAGAACCAGC TGCTGGTTCA AAGCCTGGTG GAAGCCTGCT CCGGGACCAG CACCCAGGTT TACGCCACCG GTGTGCGTTC GCGAAGCGAG TGGCAGACCC TGATTCAGCG CGGTGTTACA GGCGGGCAAG GGGATTTTTT CGCGTCCTCA CAGCCACTTG ATACTAACGT GAAAAAATAT TCACAAAGAT ACTCGGTTTA A
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Protein sequence | MRLTTKFSAF VTLLTGLTIF VTLLGCSLSF YNAIQYKFSH RVQAVATAID THLVSNDFST LRPQITELMM SADIVRVGLL HGDKQVYTLA RNGSYRPVGS SDLFRELSVP LIKHPGMSLR LVYQDPMGNY FHSLMTTAPL TGAISFIIVM LFLAVRWLQR QLAGQELLET RATRILNGER GSNVLGTIYE WPPRTSSALD TLLREIQNAR EQHSRLDTLI RSYAAQDVKT GLNNRLFFDN QLATLLEDQE KVGTHGIVMM IRLPDFNMLS DTWGHSQVEE QFFTLTNLLS TFMMRYPGAL LARYHRSDFA ALLPHRTLKE AESIAGQLIK AVDTLPNNKM LDRDDMIHIG ICAWRSGQDT EQVMEHAESA TRNAGLQGGN SWAIYDDSLP EKGRGNVRWR TLIEQMLSRG GPRLYQKPAV TREGQVHHRE LMCRIFDGNE EVSSAEYMPM VLQFGLSEEY DRLQISRLIP LLRYWPEENL AIQVTVESLI RPRFQRWLRD TLMQCEKSQR KRIIIELAEA DVGQHISRLQ PVIRLVNALG VRVAVNQAGL TLVSTSWIKE LNVELLKLHP GLVRNIEKRT ENQLLVQSLV EACSGTSTQV YATGVRSRSE WQTLIQRGVT GGQGDFFASS QPLDTNVKKY SQRYSV
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