Gene SbBS512_E3280 details

Gene Information

• Locus tag: SbBS512_E3280
• Symbol: lytS
• ID: 6269824
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shigella boydii CDC 3083-94
• Kingdom: Bacteria
• Replicon accession: NC_010658
• Strand: -
• Start bp: 3055223
• End bp: 3055711
• Gene Length: 489 bp
• Protein Length: 162 aa
• Translation table: 11
• GC content: 51%
• IMG OID: 641727186
• Product: rod shape-determining protein MreD
• Protein accession: YP_001881639
• Protein GI: 187733946
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG2891] Cell shape-determining protein
• TIGRFAM ID: [TIGR03426] rod shape-determining protein MreD

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 0.0000633
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGGCGAGCT ATCGTAGCCA GGGACGTTGG GTAATCTGGC TCTCTTTCCT CATTGCGCTG 
TTGCTGCAAA TCATGCCCTG GCCGGATAAC CTGATTGTTT TCCGGCCAAA CTGGGTGTTA 
CTTATCTTGT TGTATTGGAT CCTGGCCTTG CCCCATCGCG TAAATGTGGG CACAGGTTTT 
GTGATGGGTG CCATACTGGA TCTGATCAGC GGCTCGACGC TTGGCGTACG CGTATTGGCG 
ATGAGCATCA TTGCTTACCT GGTGGCGCTG AAATACCAGC TTTTCCGCAA CCTCGCATTA 
TGGCAGCAGG CGCTAGTCGT CATGTTGCTT TCGCTGGTGG TGGATATTAT TGTTTTCTGG 
GCAGAGTTTT TAGTGATTAA CGTCTCTTTC AGACCGGAAG TGTTCTGGAG TAGTGTAGTC 
AATGGGGTGC TCTGGCCGTG GATTTTCTTG CTGATGCGTA AAGTCCGTCA GCAGTTTGCA 
GTGCAATAA 

 

Protein sequence

MASYRSQGRW VIWLSFLIAL LLQIMPWPDN LIVFRPNWVL LILLYWILAL PHRVNVGTGF 
VMGAILDLIS GSTLGVRVLA MSIIAYLVAL KYQLFRNLAL WQQALVVMLL SLVVDIIVFW 
AEFLVINVSF RPEVFWSSVV NGVLWPWIFL LMRKVRQQFA VQ