| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SbBS512_E3143 |
|---|
| Symbol | mutS |
|---|
| ID | 6272547 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shigella boydii CDC 3083-94 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010658 |
|---|
| Strand | - |
|---|
| Start bp | 2933350 |
|---|
| End bp | 2935911 |
|---|
| Gene Length | 2562 bp |
|---|
| Protein Length | 853 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 641727064 |
|---|
| Product | DNA mismatch repair protein MutS |
|---|
| Protein accession | YP_001881523 |
|---|
| Protein GI | 187734248 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0249] Mismatch repair ATPase (MutS family) |
|---|
| TIGRFAM ID | [TIGR01070] DNA mismatch repair protein MutS |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGCAA TAGAAAATTT CGACGCCCAT ACGCCCATGA TGCAGCAGTA TCTCAGGCTG
AAAGCCCAGC ATCCCGAGAT CCTGCTGTTT TACCGGATGG GTGATTTTTA TGAACTGTTT
TATGACGACG CAAAACGCGC GTCGCAACTG CTGGATATTT CACTGACCAA ACGCGGTGCT
TCGGCGGGAG AGCCGATCCC GATGGCGGGG ATTCCCTACC ATGCGGTGGA AAACTATCTC
GCCAAACTGG TGAATCAGGG AGAGTCCGTT GCCATCTGCG AACAAATTGG CGATCCGGCG
ACCAGCAAAG GTCCGGTTGA GCGCAAAGTT GTGCGTATCG TTACGCCAGG CACCATCAGC
GATGAAGCCC TGTTACAGGA GCGTCAGGAC AACCTGCTGG CGGCTATCTG GCAGGACAGC
AAAGGTTTCG GCTACGCGAC GCTGGATATC AGCTCCGGGC GTTTTCGCCT GAGCGAACCG
GCCGACCGCG AAACGATGGC GGCAGAGCTG CAACGCACTA ATCCGGCGGA ACTGCTGTAT
GCAGAAGATT TCGCCGAGAT GTCGCTGATT GAAGGCCGTC GCGGCCTGCG CCGTCGCCCG
CTGTGGGAGT TTGAAATCGA CACCGCGCGC CAGCAGTTGA ATCTGCAATT TGGCACCCGC
GATCTGGTCG GTTTTGGCGT CGAGAACGCG CCGCGCGGAC TTTGTGCTGC CGGTTGTCTG
TTGCAGTATG CGAAAGATAC CCAACGCACG ACCCTGCCGC ATATTCGTTC TATCACCATG
GAACGTGAGC AGGACAGCAT CATTATGGAT GCCGCGACAC GTCGTAACCT GGAAATTACT
CAGAACCTGG CGGGCGGTGC GGAAAATACG CTGGCTTCTG TGCTCGACTG CACCGTCACG
CCGATGGGTA GTCGTATGCT GAAACGCTGG CTGCATATGC CAGTGCGCGA TACCCGCGTG
TTGCTTGAGC GCCAGCAAAC TATTGGCGCA TTGCAGGATT TCACCGCCGG GCTACAGCCG
GTACTGCGTC AGGTCGGCGA CCTTGAACGT ATTCTGGCTC GTCTGGCTTT ACGAACTGCT
CGCCCACGCG ATCTGGCCCG TATGCGCCAC GCTTTCCAGC AACTGCCGGA GCTGCGTGCA
CAGTTAGAAA CTGTCGATAG TGCACCGGTA CAGGCGCTAC GTGAGAAGAT GGGCGAGTTT
GCCGAGCTGC GCGATCTGCT GGAGCGAGCA ATCATCGACA CACCGCCGGT GCTGGTACGC
GACGGTGGTG TTATCGCATC GGGCTATAAC GAAGAGCTGG ATGAGTGGCG CGCGCTGGCT
GACGGCGCGA CCGATTATCT GGAGCGTCTG GAAGTCCGCG AGCGTGAACG TACCGGCCTG
GACACGCTGA AAGTTGGCTT TAATGCGGTG CACGGCTACT ACATTCAAAT CAGCCGTGGG
CAAAGCCATC TGGCACCCAT CAACTACATG CGTCGCCAGA CGCTGAAAAA CGCCGAGCGC
TACATCATTC CAGAGCTAAA AGAGTACGAA GATAAAGTTC TCACCTCAAA AGGCAAAGCA
CTGGCACTGG AAAAACAGCT TTATGAAGAG CTGTTCGACC TGCTGTTGCC GCATCTGGAA
GCGTTGCAAC AGAGCGCGAG CGCGCTGGCG GAACTCGACG TGCTGGTTAA CCTGGCGGAA
CGGGCCTATA CCCTGAACTA CACCTGCCCG ACCTTCATTG ATAAACCGGG CATTCGCATT
ACCGAAGGTC GCCATCCGGT AGTTGAACAA GTACTGAATG AGCCATTTAT CGCTAACCCG
CTGAATCTGT CGCCGCAGCG CCGTATGTTG ATTATTACCG GCCCGAACAT GGGCGGTAAA
AGTACCTATA TGCGCCAGAC CGCACTGATT GCGCTGATGG CCTACATCGG CAGCTATGTA
CCGGCACAAA AAGTCGAGAT TGGACCTATC GATCGCATCT TTACCCGCGT AGGCGCGGCA
GATGACCTGG CTTCCGGGCG CTCAACCTTT ATGGTGGAGA TGACTGAAAC CGCCAATATT
TTACATAACG CCACCGAATA CAGTCTGGTG TTAATGGATG AGATCGGGCG TGGAACGTCC
ACCTACGATG GTCTGTCGCT GGCGTGGGCG TGCGCAGAAA ATCTGGCGAA TAAGATTAAG
GCATTGACGC TGTTTGCCAC CCACTATTTC GAGCTGACCC AGCTACCGGA GAAAATGGAA
GACGTCGCCA ACGTGCATCT CGATGCGCTG GAGCACGGAG ACACCATTGC CTTTATGCAT
AGCGTGCAGG ATGGCGCGGC GAGCAAAAGC TACGGCCTGG CGGTTGCAGC TCTGGCAGGC
GTGCCAAAAG AGGTGATTAA GCGCGCACGG CAAAAACTGC GTGAGCTGGA AAGCATTTCG
CCGAACGCCG CCGCTACGCA AGTGGATGGT ACGCAAATGT CTTTGCTGTC AGTACCGGAA
GAAACCTCGC CAGCGGTCGA AGCTCTGGAA AACCTGGACC CGGATTCACT GACTCCGCGT
CAGGCGCTGG AATGGATTTA TCGCTTGAAG AGCCTGGTGT AA
|
|---|
| Protein sequence | MSAIENFDAH TPMMQQYLRL KAQHPEILLF YRMGDFYELF YDDAKRASQL LDISLTKRGA
SAGEPIPMAG IPYHAVENYL AKLVNQGESV AICEQIGDPA TSKGPVERKV VRIVTPGTIS
DEALLQERQD NLLAAIWQDS KGFGYATLDI SSGRFRLSEP ADRETMAAEL QRTNPAELLY
AEDFAEMSLI EGRRGLRRRP LWEFEIDTAR QQLNLQFGTR DLVGFGVENA PRGLCAAGCL
LQYAKDTQRT TLPHIRSITM EREQDSIIMD AATRRNLEIT QNLAGGAENT LASVLDCTVT
PMGSRMLKRW LHMPVRDTRV LLERQQTIGA LQDFTAGLQP VLRQVGDLER ILARLALRTA
RPRDLARMRH AFQQLPELRA QLETVDSAPV QALREKMGEF AELRDLLERA IIDTPPVLVR
DGGVIASGYN EELDEWRALA DGATDYLERL EVRERERTGL DTLKVGFNAV HGYYIQISRG
QSHLAPINYM RRQTLKNAER YIIPELKEYE DKVLTSKGKA LALEKQLYEE LFDLLLPHLE
ALQQSASALA ELDVLVNLAE RAYTLNYTCP TFIDKPGIRI TEGRHPVVEQ VLNEPFIANP
LNLSPQRRML IITGPNMGGK STYMRQTALI ALMAYIGSYV PAQKVEIGPI DRIFTRVGAA
DDLASGRSTF MVEMTETANI LHNATEYSLV LMDEIGRGTS TYDGLSLAWA CAENLANKIK
ALTLFATHYF ELTQLPEKME DVANVHLDAL EHGDTIAFMH SVQDGAASKS YGLAVAALAG
VPKEVIKRAR QKLRELESIS PNAAATQVDG TQMSLLSVPE ETSPAVEALE NLDPDSLTPR
QALEWIYRLK SLV
|
|---|
| |