| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SbBS512_E2975 |
|---|
| Symbol | rluD |
|---|
| ID | 6269120 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shigella boydii CDC 3083-94 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010658 |
|---|
| Strand | - |
|---|
| Start bp | 2781503 |
|---|
| End bp | 2782483 |
|---|
| Gene Length | 981 bp |
|---|
| Protein Length | 326 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 641726917 |
|---|
| Product | 23S rRNA pseudouridine synthase D |
|---|
| Protein accession | YP_001881382 |
|---|
| Protein GI | 187732689 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
|---|
| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.0427325 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCACAAC GAGTACAGCT CACTGCAACG GTGTCCGAAA ACCAACTCGG TCAACGCTTA
GATCAGGCTT TGGCCGAAAT GTTCCCGGAT TATTCACGTT CGCGAATAAA AGAATGGATC
CTCGACCAGC GCGTGCTGGT AAACGGCAAA GTTTGTGATA AGCCGAAAGA AAAAGTATTG
GGTGGCGAGC AGGTTGCCAT CAACGCTGAG ATTGAAGAAG AAGCGCGTTT TGAACCGCAG
GATATCCCGC TGGATATTGT CTATGAAGAT GAAGATATCA TCGTCATTAA TAAACCGCGC
GACCTGGTGG TACATCCTGG CGCGGGTAAC CTGGATGGCA CGGTACTGAA TGCGTTGCTT
CATTATTATC CGCCCATTGC CGATGTACCG CGTGCGGGCA TCGTCCATCG TCTGGATAAA
GACACCACTG GCCTGATGGT TGTGGCAAAA ACCGTTCCGG CTCAGACGCG TTTAGTCGAA
TCTTTGCAAA GGCGTGAAAT TACTCGTGAG TATGAAGCGG TGGCAATTGG TCATATGACC
GCTGGCGGTA CAGTAGATGA ACCAATCAGC CGCCACCCGA CCAAACGTAC TCACATGGCG
GTGCATCCCA TGGGCAAACC GGCGGTCACT CACTATCGCA TCATGGAACA CTTCCGTGTG
CACACGCGTC TGCGGTTGCG TCTGGAAACC GGACGTACGC ACCAGATCCG CGTGCATATG
GCGCATATTA CCCATCCGCT GGTGGGCGAT CCGGTTTATG GTGGCCGTCC GCGTCCGCCA
AAAGGTGCTT CGGAAGCGTT TATCTCCACG CTGCGTAAGT TTGACCGCCA GGCGCTTCAT
GCAACTATGC TGCGTCTTTA TCACCCGATC TCCGGCATCG AAATGGAATG GCATGCGCCT
ATTCCAGAAG ATATGGTGGA GTTGATTGAG GTTATGCGCG CCGATTTCGA AGAGCATAAG
GATGAAGTGG ACTGGTTATG A
|
|---|
| Protein sequence | MAQRVQLTAT VSENQLGQRL DQALAEMFPD YSRSRIKEWI LDQRVLVNGK VCDKPKEKVL
GGEQVAINAE IEEEARFEPQ DIPLDIVYED EDIIVINKPR DLVVHPGAGN LDGTVLNALL
HYYPPIADVP RAGIVHRLDK DTTGLMVVAK TVPAQTRLVE SLQRREITRE YEAVAIGHMT
AGGTVDEPIS RHPTKRTHMA VHPMGKPAVT HYRIMEHFRV HTRLRLRLET GRTHQIRVHM
AHITHPLVGD PVYGGRPRPP KGASEAFIST LRKFDRQALH ATMLRLYHPI SGIEMEWHAP
IPEDMVELIE VMRADFEEHK DEVDWL
|
|---|
| |