Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SbBS512_E2472 |
Symbol | rumB |
ID | 6270361 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shigella boydii CDC 3083-94 |
Kingdom | Bacteria |
Replicon accession | NC_010658 |
Strand | - |
Start bp | 2274850 |
End bp | 2275977 |
Gene Length | 1128 bp |
Protein Length | 375 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 641726463 |
Product | 23S rRNA methyluridine methyltransferase |
Protein accession | YP_001880944 |
Protein GI | 187730916 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
TIGRFAM ID | [TIGR02085] 23S rRNA (uracil-5-)-methyltransferase RumB |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 0.112425 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAGTGCG CACTTTACGA CGCGGGTCGC TGTCGTTCCT GTCAGTGGAT AACGCAGCTG ATTCCAGAGC AACTCTCCGC TAAAACCGCC GATCTTAAAA ATCTGCTCGC CGATTTTCCG GTTGAGGAAT GGTGCGCGCC GGTGTCAGGC CCGGAACAAG GGTTTCGTAA TAAAGCCAAA ATGGTGGTGA GTGGTAGCGT TGAAAAACCA CTGCTCGGTA TGCTGCATCG CGATGGCACG CCGGAAGACC TTTGTGACTG CCCGCTTTAT CCTGCCTCTT TTGCGCCCGT TTTTGCGGCG CTAAAACCGT TTATCGCCTG TGCGGGGTTA ACGCCCTACA ACGTGGCGCG TAAGCGTGGC GAACTGAAAT ACATTCTGCT GACTGAAAGC CAGAGCGATG GCGGCATGAT GCTGCGCTTT GTACTGCGTT CTGAAACCAA ACTGGCACAA CTGCGTAAGG CGCTGCCGTG GTTACAGGAA CAACTACCGC AACTGAAAGT TATTACCGTC AATATTCAGC CGGTACATAT GGCGATTATG GAAGGGGAGA CGGAGATCTA CCTGACTGAA CAACAGGCGC TGGCAGAGCG TTTTAATGAC GTACCGCTGT GGATCCGTCC GCAAAGTTTC TTCCAGACTA ATCCGGCGGT CGCCAGCCAG CTGTACGCTA CCGTGCGCGA CTGGGTACGG CAGCTGCCAG TTAAACATAT GTGGGATCTG TTCTGCGGTG TGGGGGGCTT TGGTTTACAC TGCGCGACGC CTGACATGCA GTTAACCGGG ATCGAAATTG CGCCAGAGGC CATTGCCTGT GCAAAGCAGT CAGCCGCTGA ACTGGGCTTA ACTCGTTTAC AATTTCAGGC GCTGGACTCC ACTCAGTTTG CCACTGCTCA GGGGGAGGTG CAGGAGTTGG TGCTGGTTAA CCCGCCGCGC CGCGGCATTG GTAAACCGCT GTGTGATTAT CTCTCAACGA TGGCACCGCG TTTTATCATC TACTCCAGCT GTAACGCCCA AACTATGGCG AAAGATATCC GCGAACTGCC TGGGTTTCGC ATCGAACGGG TACAGCTTTT TGATATGTTC CCGCACACCG CGCACTATGA AGTGCTGACG CTGCTGGTGA AGCAATAA
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Protein sequence | MQCALYDAGR CRSCQWITQL IPEQLSAKTA DLKNLLADFP VEEWCAPVSG PEQGFRNKAK MVVSGSVEKP LLGMLHRDGT PEDLCDCPLY PASFAPVFAA LKPFIACAGL TPYNVARKRG ELKYILLTES QSDGGMMLRF VLRSETKLAQ LRKALPWLQE QLPQLKVITV NIQPVHMAIM EGETEIYLTE QQALAERFND VPLWIRPQSF FQTNPAVASQ LYATVRDWVR QLPVKHMWDL FCGVGGFGLH CATPDMQLTG IEIAPEAIAC AKQSAAELGL TRLQFQALDS TQFATAQGEV QELVLVNPPR RGIGKPLCDY LSTMAPRFII YSSCNAQTMA KDIRELPGFR IERVQLFDMF PHTAHYEVLT LLVKQ
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