Gene SbBS512_E2472 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSbBS512_E2472 
SymbolrumB 
ID6270361 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShigella boydii CDC 3083-94 
KingdomBacteria 
Replicon accessionNC_010658 
Strand
Start bp2274850 
End bp2275977 
Gene Length1128 bp 
Protein Length375 aa 
Translation table11 
GC content54% 
IMG OID641726463 
Product23S rRNA methyluridine methyltransferase 
Protein accessionYP_001880944 
Protein GI187730916 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase 
TIGRFAM ID[TIGR02085] 23S rRNA (uracil-5-)-methyltransferase RumB 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value0.112425 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAGTGCG CACTTTACGA CGCGGGTCGC TGTCGTTCCT GTCAGTGGAT AACGCAGCTG 
ATTCCAGAGC AACTCTCCGC TAAAACCGCC GATCTTAAAA ATCTGCTCGC CGATTTTCCG
GTTGAGGAAT GGTGCGCGCC GGTGTCAGGC CCGGAACAAG GGTTTCGTAA TAAAGCCAAA
ATGGTGGTGA GTGGTAGCGT TGAAAAACCA CTGCTCGGTA TGCTGCATCG CGATGGCACG
CCGGAAGACC TTTGTGACTG CCCGCTTTAT CCTGCCTCTT TTGCGCCCGT TTTTGCGGCG
CTAAAACCGT TTATCGCCTG TGCGGGGTTA ACGCCCTACA ACGTGGCGCG TAAGCGTGGC
GAACTGAAAT ACATTCTGCT GACTGAAAGC CAGAGCGATG GCGGCATGAT GCTGCGCTTT
GTACTGCGTT CTGAAACCAA ACTGGCACAA CTGCGTAAGG CGCTGCCGTG GTTACAGGAA
CAACTACCGC AACTGAAAGT TATTACCGTC AATATTCAGC CGGTACATAT GGCGATTATG
GAAGGGGAGA CGGAGATCTA CCTGACTGAA CAACAGGCGC TGGCAGAGCG TTTTAATGAC
GTACCGCTGT GGATCCGTCC GCAAAGTTTC TTCCAGACTA ATCCGGCGGT CGCCAGCCAG
CTGTACGCTA CCGTGCGCGA CTGGGTACGG CAGCTGCCAG TTAAACATAT GTGGGATCTG
TTCTGCGGTG TGGGGGGCTT TGGTTTACAC TGCGCGACGC CTGACATGCA GTTAACCGGG
ATCGAAATTG CGCCAGAGGC CATTGCCTGT GCAAAGCAGT CAGCCGCTGA ACTGGGCTTA
ACTCGTTTAC AATTTCAGGC GCTGGACTCC ACTCAGTTTG CCACTGCTCA GGGGGAGGTG
CAGGAGTTGG TGCTGGTTAA CCCGCCGCGC CGCGGCATTG GTAAACCGCT GTGTGATTAT
CTCTCAACGA TGGCACCGCG TTTTATCATC TACTCCAGCT GTAACGCCCA AACTATGGCG
AAAGATATCC GCGAACTGCC TGGGTTTCGC ATCGAACGGG TACAGCTTTT TGATATGTTC
CCGCACACCG CGCACTATGA AGTGCTGACG CTGCTGGTGA AGCAATAA
 
Protein sequence
MQCALYDAGR CRSCQWITQL IPEQLSAKTA DLKNLLADFP VEEWCAPVSG PEQGFRNKAK 
MVVSGSVEKP LLGMLHRDGT PEDLCDCPLY PASFAPVFAA LKPFIACAGL TPYNVARKRG
ELKYILLTES QSDGGMMLRF VLRSETKLAQ LRKALPWLQE QLPQLKVITV NIQPVHMAIM
EGETEIYLTE QQALAERFND VPLWIRPQSF FQTNPAVASQ LYATVRDWVR QLPVKHMWDL
FCGVGGFGLH CATPDMQLTG IEIAPEAIAC AKQSAAELGL TRLQFQALDS TQFATAQGEV
QELVLVNPPR RGIGKPLCDY LSTMAPRFII YSSCNAQTMA KDIRELPGFR IERVQLFDMF
PHTAHYEVLT LLVKQ