Gene SbBS512_E2442 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSbBS512_E2442 
SymbolcydD 
ID6271567 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShigella boydii CDC 3083-94 
KingdomBacteria 
Replicon accessionNC_010658 
Strand
Start bp2242781 
End bp2244547 
Gene Length1767 bp 
Protein Length588 aa 
Translation table11 
GC content53% 
IMG OID641726434 
Productcysteine/glutathione ABC transporter membrane/ATP-binding component 
Protein accessionYP_001880916 
Protein GI187732874 
COG category[C] Energy production and conversion
[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG4988] ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components 
TIGRFAM ID[TIGR02857] thiol reductant ABC exporter, CydD subunit 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.000262034 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATAAAT CTCGTCAAAA AGAGTTAACC CGCTGGTTAA AACAGCAAAG CGTCATCTCC 
CAACGTTGGC TGAATATTTC TCGTCTGCTG GGCTTTGTGA GTGGCATATT GATCATTGCC
CAGGCCTGGT TCATGGCGCG AATTCTGCAA CATATGATTA TGGAGAATAT TCCCCGTGAA
GCCCTGCTGC TTCCCTTTAC GTTACTGGTT CTGACCTTTG TACTGCGCGC ATGGGTGGTC
TGGTTACGCG AACGGGTGGG TTATCACGCC GGGCAGCATA TCCGCTTTGC CATCCGCCGG
CAGGTTCTCG ACCGTCTGCA ACAAGCAGGG CCAGCGTGGA TTCAGGGTAA ACCTGCGGGG
AGCTGGGCGA CGCTGGTACT CGAGCAAATT GACGATATGC ATGATTACTA TGCACGCTAC
CTGCCGCAAA TGGCGCTGGC AGTGTCGGTG CCGTTGCTGA TTGTGGTGGC AATCTTCCCC
TCAAACTGGG CTGCGGCGCT CATTCTGCTG GGCACTGCAC CGTTAATTCC GTTGTTTATG
GCGCTGGTTG GAATGGGGGC TGCCGATGCT AACCGACGTA ACTTTCTCGC TCTTGCTCGC
TTAAGTGGGC ATTTCCTCGA TCGCCTGCGC GGCATGGAAA CATTGCGTAT TTTTGGTCGT
GGTGAAGCTG AAATTGAAAG TATTCGTTCT GCTTCGGAAG ATTTCCGCCA ACGGACAATG
GAAGTGCTAC GGCTGGCATT TTTATCCTCC GGCATTCTCG AATTTTTTAC CTCGCTGTCA
ATTGCTCTGG TGGCGGTCTA CTTTGGTTTT TCCTATCTCG GCGAGCTGGA TTTTGGTCAC
TACGATACTG GCGTGACGCT GGCTGCGGGT TTTCTGGCCC TGATCCTTGC GCCAGAGTTT
TTCCAGCCAT TACGCGATCT CGGTACGTTT TATCATGCTA AAGCCCAGGC TGTTGGTGGG
GCAAACAGTC TGAAAACATT TATGGAAACC CCGCTCGCCC ATCCGCAGCG TGGCGAGGTG
GAATTAGCAT CGACCGATCC GGTGACCATT GAGGCCGAGG ATCTGTTTAT CACGTCGCCG
GAAGGTAAAA CGCTGGCCGG ACCGCTGAAC TTTACTTTGC CAGCAGGCCA ACGTGCCGTG
TTGGTTGGTC GCAGCGGTTC AGGTAAAAGT TCACTGTTGA ACGCGCTTTC TGGTTTTCTC
TCATATCAGG GATCGCTACG AATCAACGGG ATAGAATTAC GCGATTTATC ACCAGAATCA
TGGCGTAAAC ATCTCTCCTG GGTTGGGCAA AATCCACAAT TACCGGCAGC AACATTACGG
GATAACGTAC TACTGGCGCG ACCTGATGCC AGCGAACATG AATTACAAGC AGCGCTGGAT
AACGCCTGGG TCAGCGAGTT TCTACCGCTC CTGCCACAAG GCGTTGATAC GCCTGTTGGC
GACCAGGCTG CCCGCCTTTC CGTGGGGCAG GCGCAGCGCG TGGCGGTGGC CCGTGTGTTA
CTAAATCCCT GTTCGCTATT ACTGTTGGAT GAACCCGCTG CCAGCCTTGA TGCTCACAGT
GAACAGCGCG TAATGGAGGC GCTGAATGCC GCCTCTCTGC GCCAGACAAC GTTAATGGTC
ACCCACCAGT TAGAAGATCT TGCTGACTGG GATGTCATTT GGGTTATGCA GGATGGCCGG
ATTATTGAGC AAGGACGTTA CGCGGAATTA AGTGTGGCTG GTGGCCCATT CGCCACATTA
CTGGCCCATC GTCAGGAGGA GATTTAA
 
Protein sequence
MNKSRQKELT RWLKQQSVIS QRWLNISRLL GFVSGILIIA QAWFMARILQ HMIMENIPRE 
ALLLPFTLLV LTFVLRAWVV WLRERVGYHA GQHIRFAIRR QVLDRLQQAG PAWIQGKPAG
SWATLVLEQI DDMHDYYARY LPQMALAVSV PLLIVVAIFP SNWAAALILL GTAPLIPLFM
ALVGMGAADA NRRNFLALAR LSGHFLDRLR GMETLRIFGR GEAEIESIRS ASEDFRQRTM
EVLRLAFLSS GILEFFTSLS IALVAVYFGF SYLGELDFGH YDTGVTLAAG FLALILAPEF
FQPLRDLGTF YHAKAQAVGG ANSLKTFMET PLAHPQRGEV ELASTDPVTI EAEDLFITSP
EGKTLAGPLN FTLPAGQRAV LVGRSGSGKS SLLNALSGFL SYQGSLRING IELRDLSPES
WRKHLSWVGQ NPQLPAATLR DNVLLARPDA SEHELQAALD NAWVSEFLPL LPQGVDTPVG
DQAARLSVGQ AQRVAVARVL LNPCSLLLLD EPAASLDAHS EQRVMEALNA ASLRQTTLMV
THQLEDLADW DVIWVMQDGR IIEQGRYAEL SVAGGPFATL LAHRQEEI