| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SbBS512_E2410 |
|---|
| Symbol | msbA |
|---|
| ID | 6269087 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shigella boydii CDC 3083-94 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010658 |
|---|
| Strand | - |
|---|
| Start bp | 2205643 |
|---|
| End bp | 2207391 |
|---|
| Gene Length | 1749 bp |
|---|
| Protein Length | 582 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 641726407 |
|---|
| Product | lipid transporter ATP-binding/permease protein |
|---|
| Protein accession | YP_001880889 |
|---|
| Protein GI | 187730648 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
|---|
| TIGRFAM ID | [TIGR02203] lipid A export permease/ATP-binding protein MsbA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCATAACG ACAAAGATCT CTCTACGTGG CAGACGTTCC GCCGACTGTG GCCAACCATT
GCGCCTTTTA AAGCGGGTCT GATCGTGGCG GGCGTAGCGT TAATCCTCAA CGCAGCCAGC
GATACCTTCA TGTTATCGCT CCTTAAGCCA CTTCTTGATG ATGGCTTTGG TAAAACAGAT
CGCTCCGTGC TGGTGTGGAT GCCGCTGGTG GTGATCGGGC TGATGATTTT ACGTGGTATC
ACCAGCTATG TCTCCAGCTA CTGTATCTCC TGGGTATCAG GAAAGGTGGT AATGACCATG
CGTCGCCGCC TGTTTGGTCA CATGATGGGA ATGCCGGTTT CATTTTTTGA CAAACAGTCA
ACGGGGACGC TGTTGTCACG TATCACCTAC GATTCCGAAC AGGTTGCTTC TTCTTCTTCC
GGCGCACTGA TAACGGTTGT GCGTGAAGGT GCGTCAATCA TCGGCCTGTT CATCATGATG
TTCTATTACA GTTGGCAACT GTCGATCATT TTGATTGTGC TGGCACCGAT TGTTTCGATT
GCGATTCGCG TAGTATCGAA GCGTTTTCGC AACATCAGTA AAAACATGCA GAACACCATG
GGGCAGGTGA CCACCAGCGC CGAACAAATG CTGAAGGGCC ACAAAGAAGT ATTGATTTTC
GGTGGTCAGG AAGTGGAAAC GAAACGCTTT GATAAAGTCA GCAACCGAAT GCGTCTTCAG
GGGATGAAAA TGGTTTCAGC CTCTTCCATC TCTGATCCGA TCATTCAGCT GATCGCCTCT
TTGGCGCTGG CGTTTGTTCT GTATGCGGCG AGCTTCCCAA GTGTCATGGA TAGCCTGACT
GCCGGTACGA TTACCGTTGT TTTCTCTTCA ATGATTGCAC TGATGCGTCC GCTGAAATCA
CTGACCAACG TTAACGCCCA GTTCCAGCGC GGTATGGCGG CTTGTCAGAC GCTGTTTACC
ATTCTGGACA GTGAGCAGGA GAAAGACGAA GGTAAGCGCG TGATCGAGCG TGCGACTGGC
GACGTGGAAT TCCGCAATGT CACCTTTACT TATCCGGGAC GTGACGTACC TGCATTGCGT
AACATCAACC TGAAAATTCC GGCAGGGAAG ACGGTTGCTC TGGTTGGACG CTCTGGTTCA
GGTAAATCAA CCATCGCCAG CCTGATCACT CGTTTTTACG ATATTGATGA AGGCGAAATC
CTGATGGATG GTCACGATCT GCGCGAGTAT ACCCTGGCGT CGTTACGTAA CCAGGTTGCT
CTGGTGTCGC AGAATGTCCA TCTGTTTAAC GATACGGTTG CTAACAACAT TGCTTACGCA
CGGACTGAAC AGTACAGCCG TGAGCAAATT GAAGAAGCGG CGCGTATGGC CTACGCCATG
GACTTCATCA ATAAGATGGA TAACGGTCTC GATACAGTGA TTGGTGAAAA CGGCGTGCTG
CTCTCTGGCG GTCAGCGTCA GCGTATTGCT ATCGCTCGAG CCTTGCTGCG TGATAGCCCG
ATTCTGATTC TGGATGAAGC TACCTCGGCT CTGGATACCG AATCCGAACG TGCGATTCAG
GCGGCACTGG ATGAGTTGCA GAAAAACCGT ACCTCTCTGG TGATTGCCCA CCGCTTGTCT
ACCATTGAAA AGGCAGACGA AATCGTGGTC GTCGAGGATG GCGTCATTGT GGAACGCGGT
ACGCATAACG ATTTGCTTGA GCACCGCGGC GTTTACGCGC AACTTCACAA AATGCAGTTT
GGCCAATGA
|
|---|
| Protein sequence | MHNDKDLSTW QTFRRLWPTI APFKAGLIVA GVALILNAAS DTFMLSLLKP LLDDGFGKTD
RSVLVWMPLV VIGLMILRGI TSYVSSYCIS WVSGKVVMTM RRRLFGHMMG MPVSFFDKQS
TGTLLSRITY DSEQVASSSS GALITVVREG ASIIGLFIMM FYYSWQLSII LIVLAPIVSI
AIRVVSKRFR NISKNMQNTM GQVTTSAEQM LKGHKEVLIF GGQEVETKRF DKVSNRMRLQ
GMKMVSASSI SDPIIQLIAS LALAFVLYAA SFPSVMDSLT AGTITVVFSS MIALMRPLKS
LTNVNAQFQR GMAACQTLFT ILDSEQEKDE GKRVIERATG DVEFRNVTFT YPGRDVPALR
NINLKIPAGK TVALVGRSGS GKSTIASLIT RFYDIDEGEI LMDGHDLREY TLASLRNQVA
LVSQNVHLFN DTVANNIAYA RTEQYSREQI EEAARMAYAM DFINKMDNGL DTVIGENGVL
LSGGQRQRIA IARALLRDSP ILILDEATSA LDTESERAIQ AALDELQKNR TSLVIAHRLS
TIEKADEIVV VEDGVIVERG THNDLLEHRG VYAQLHKMQF GQ
|
|---|
| |