| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SbBS512_E2332 |
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| Symbol | yccZ |
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| ID | 6273202 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shigella boydii CDC 3083-94 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010658 |
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| Strand | + |
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| Start bp | 2120506 |
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| End bp | 2121666 |
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| Gene Length | 1161 bp |
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| Protein Length | 386 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 641726336 |
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| Product | outer membrane lipoprotein, group 4 capsule (G4C) polysaccharide |
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| Protein accession | YP_001880819 |
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| Protein GI | 187732435 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1596] Periplasmic protein involved in polysaccharide export |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 0.132677 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGACTGATA AATATAAACC AATGAAAAAG AACATTTTTA AGTTTTCGAT ACTGACATTG
GCTGTTCTGT CTTTGACAGC ATGTACCCTT GTTCCTGGTC AGAATTTATC GACCAGTAAC
AAGGATGTCA TTGAACTACC TGACAATCAG TATGACCTGG ACAAAATGGT CAATATCTAT
CCCGTCACGC CAGGATTGAT TGATCAGTTG CGCGCCAAAC CGATTATGTC GCAGGCTAAC
CCGGAGCTGG AGCAGCAAAT CGCAAACTAT GAATATCGTA TCGGGATTGG TGATGTGTTG
ATGGTTACGG TCTGGGATCA CCCGGAACTA ACCACCCCCG CAGGGCAATA CCGTAGCGCC
AGTGATACCG GCAACTGGGT TAACGCCGAT GGTGCGATTT TCTACCCCTA TATTGGTCGC
CTGAAAGTGG CCGGGAAAAC ACTTACCCAG GTACGCAACG AGATTACAGC GCGTCTCGAT
TCAGTCATTG AAAGCCCGCA AGTCGATGTC AGCGTCGCGG CGTTCCGATC GCAAAAAGCG
TACGTCACCG GCGAAGTCAG CAAATCGGGT CAGCAGCCGA TTACCAATAT TCCTCTGACC
ATCATGGATG CGATTAACGC CGCGGGCGGT CTGACCGCAG ATGCAGACTG GCGCAACGTG
GTGCTCACCC AGAATGGCGT AAAGACCAAA GTGAACCTCT ATGCGCTGAT GCAGCGTGGC
GACTTGCGCC AGAACAAACT GCTGCACCCG GGCGATATTT TATTTATTCC GCGCAACGAT
GATCTGAAAG TCTTCGTGAT GGGTGAAGTG GGTAAACAGA GCACGCTGAA AATGGACCGC
AGCGGTATGA CCCTGGCGGA AGCGCTGGGT AACGCTGAGG GTATGAATCA GGATGTCGCT
GATGCGACGG GGATTTTTGT TATTCGTGCA ACGCAAAACA AGCAGAATGG CAAAATCGCC
AATATTTATC AGCTGAATGC GAAGGACGCA TCGGCAATGA TACTCGGAAC GGAATTCCAG
CTTGAACCTT ACGACATTGT TTATGTCACT ACCGCGCCGC TGGCTCGTTG GAACCGTGTG
ATTTCTCTGC TGGTACCGAC GATTTCCGGG GTGCATGACC TGACAGAGAC TTCACGGTGG
ATTCAAACAT GGCCCAACTA A
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| Protein sequence | MTDKYKPMKK NIFKFSILTL AVLSLTACTL VPGQNLSTSN KDVIELPDNQ YDLDKMVNIY
PVTPGLIDQL RAKPIMSQAN PELEQQIANY EYRIGIGDVL MVTVWDHPEL TTPAGQYRSA
SDTGNWVNAD GAIFYPYIGR LKVAGKTLTQ VRNEITARLD SVIESPQVDV SVAAFRSQKA
YVTGEVSKSG QQPITNIPLT IMDAINAAGG LTADADWRNV VLTQNGVKTK VNLYALMQRG
DLRQNKLLHP GDILFIPRND DLKVFVMGEV GKQSTLKMDR SGMTLAEALG NAEGMNQDVA
DATGIFVIRA TQNKQNGKIA NIYQLNAKDA SAMILGTEFQ LEPYDIVYVT TAPLARWNRV
ISLLVPTISG VHDLTETSRW IQTWPN
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