Gene SbBS512_E2329 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSbBS512_E2329 
SymbolymcC 
ID6268411 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShigella boydii CDC 3083-94 
KingdomBacteria 
Replicon accessionNC_010658 
Strand+ 
Start bp2116998 
End bp2117642 
Gene Length645 bp 
Protein Length214 aa 
Translation table11 
GC content48% 
IMG OID641726333 
Productgroup 4 capsule (G4C) polysaccharide, lipoprotein YmcC 
Protein accessionYP_001880816 
Protein GI187731853 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones4 
Plasmid unclonability p-value0.0000000000255806 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGCGCCCTC TTATTTTATC GATTTTCGCA CTATTTCTTG CGGGATGTAC GCACAGCCAG 
CAAAGTATGG TCGATACATT TCGCGCCAGC CTTTTCGATA ATCAGGATAT CACCGTAGCG 
GATCAGCAGA TCCAGGCGTT GCCTTATTCC ACGATGTATT TACGCCTTAA TGAAGGGCAA 
CGAATCTTTG TGGTACTGGG ATATATAGAA CAAGAACAAA GCAAATGGTT ATCCCAGGAT 
AACGCCATGC TGGTTACCCA CAATGGACGT CTTTTAAAAA CCGTCAAACT TAATAATAAT 
CTGCTGGAAG TGACAAATTC CGGGCAGGAC CCTCTGCGTA ACGCGCTGGC AATAAAAGAT 
GGCAGCCGCT GGACGCGCGA TATTCTCTGG AGTGAAGACA ACCATTTTCG CTCTGCGACC 
CTGAGTTCTA CTTTTTCCTT TGCTGGATTA GAGACGCTGA ATATTGCGGG TCGCAATGTG 
CTGTGTAATG TCTGGCAGGA AGAGGTGACT TCCACGCGGC CAGAAAAACA GTGGCAAAAC 
ACATTCTGGG TCGATTCGGC TACTGGCCAG GTTCGTCAAA GTCGGCAAAT GTTAGGCGCA 
GGGGTTATTC CCGTAGAAAT GACGTTTCTT AAACCCGCAC CATGA
 
Protein sequence
MRPLILSIFA LFLAGCTHSQ QSMVDTFRAS LFDNQDITVA DQQIQALPYS TMYLRLNEGQ 
RIFVVLGYIE QEQSKWLSQD NAMLVTHNGR LLKTVKLNNN LLEVTNSGQD PLRNALAIKD 
GSRWTRDILW SEDNHFRSAT LSSTFSFAGL ETLNIAGRNV LCNVWQEEVT STRPEKQWQN 
TFWVDSATGQ VRQSRQMLGA GVIPVEMTFL KPAP