Gene SbBS512_E2241 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSbBS512_E2241 
Symbolrne 
ID6272284 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShigella boydii CDC 3083-94 
KingdomBacteria 
Replicon accessionNC_010658 
Strand
Start bp2038790 
End bp2041975 
Gene Length3186 bp 
Protein Length1061 aa 
Translation table11 
GC content56% 
IMG OID641726263 
Productribonuclease E 
Protein accessionYP_001880747 
Protein GI187730344 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1530] Ribonucleases G and E 
TIGRFAM ID[TIGR00757] ribonuclease, Rne/Rng family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000000115068 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAAGAA TGTTAATCAA CGCAACTCAG CAGGAAGAGT TGCGCGTTGC CCTTGTAGAT 
GGGCAGCGTC TGTATGACCT GGATATCGAA AGTCCAGGGC ACGAGCAGAA AAAGGCAAAC
ATCTACAAAG GTAAAATCAC CCGCATTGAA CCGAGTCTGG AAGCTGCTTT TGTTGATTAC
GGCGCTGAAC GTCACGGTTT CCTCCCACTA AAAGAAATTG CCCGCGAATA TTTCCCTGCT
AACTACAGTG CTCATGGTCG TCCCAACATT AAAGATGTGT TGCGTGAAGG TCAGGAAGTC
ATTGTTCAGA TCGATAAAGA AGAGCGCGGC AACAAAGGCG CGGCATTAAC CACCTTTATC
AGTCTGGCGG GTAGCTATCT GGTTCTGATG CCGAACAACC CGCGCGCGGG TGGCATTTCT
CGCCGTATCG AAGGCGACGA CCGTACCGAA TTAAAAGAAG CACTGGCAAA CCTTGAACTG
CCGGAAGGCA TGGGGCTTAT CGTGCGCACC GCTGGCGTCG GCAAATCTGC TGAGGCGCTG
CAATGGGATT TAAGCTTCCG TCTGAAACAC TGGGAAGCCA TCAAAAAAGC CGCTGAAAGC
CGCCCGGCCC CGTTCCTGAT TCATCAGGAG AGCAACGTAA TCGTTCGCGC TTTCCGCGAT
TACTTACGCC AGGACATCGG CGAAATCCTT ATCGATAACC CGAAAGTGCT CGAACTGGCA
CGTCAGCATA TCGCTGCATT AGGTCGCCCG GATTTCAGCA GCAAAATCAA ACTGTACACC
GGCGAGATCC CGCTGTTCAG CCACTACCAG ATCGAGTCGC AGATCGAGTC CGCCTTCCAG
CGTGAAGTCC GTCTGCCGTC CGGTGGTTCG ATTGTTATCG ACAGTACCGA AGCGTTAACT
GCCATCGACA TCAACTCCGC ACGCGCGACC CGCGGCGGCG ATATCGAAGA AACCGCATTT
AACACCAACC TCGAAGCTGC CGATGAGATT GCTCGTCAGC TGCGCCTGCG TGACCTCGGC
GGCCTGATTG TTATCGACTT CATCGACATG ACGCCTGTAC GCCACCAGCG TGCGGTAGAA
AACCGTCTGC GTGAAGCGGT GCGTCAGGAC CGTGCGCGTA TTCAAATCAG CCATATTTCT
CGCTTTGGCC TGCTGGAAAT GTCCCGTCAG CGCCTGAGCC CATCACTGGG TGAATCCAGT
CATCACGTTT GTCCGCGTTG TTCTGGTACT GGCACCGTGC GTGACAACGA ATCGCTGTCG
CTCTCTATTC TGCGTCTGAT CGAAGAAGAA GCGCTGAAAG AGAACACCCA GGAAGTTCAC
GCCATTGTTC CTGTACCAAT CGCTTCTTAC CTGCTGAATG AAAAACGTTC TGCGGTAAAT
GCCATTGAAA CTCGTCAGGA CGGTGTGCGC TGCGTGATTG TGCCAAACGA TCAGATGGAA
ACCCCGCACT ACCACGTGCT GCGCGTGCGT AAAGGGGAAG AAACCCCAAC CTTAAGCTAC
ATGCTGCCGA AGCTGCATGA AGAAGCGATG GCGCTGCCGT CTGAAGAAGA GTTCGCTGAA
CGTAAGCGTC CGGAACAACC TGCGCTGGCA ACCTTTGCCA TGCCGGATGT GCCGCCAGCG
CCAACGCCAG CTGAACCTGC CGCGCCTGTT GTAGCTCCAG CACCGAAAGC TGCACCGGCA
ACACCAGCAG CTCCTGCACA ACCTGGGCTG TTGAGCCGCT TCTTCGGCGC ACTGAAAGCG
CTGTTCAGCG GTAGTGAAGA AACCAAACCG ACCGAGCAAC CAGCACCGAA AGCAGAAGCG
AAACCGGAAC GTCAACAGGA TCGTCGCAAG CCTCGTCAGA ACAACCGCCG TGACCGTAAT
GAGCGCCGCG ACACCCGTAG TGAACGTACT GAAGGCAGCG ATAATCGCGA AGAAAACCGT
CGTAATCGTC GCCAGGCACA GCAGCAGACT GCCGAGACGC GTGAGAGCCG TCAGCAAGCT
GAGGTAACGG AAAAAGCACG TACCACCGAC GAGCAGCAAG CGCCGCGTCG TGAACGTAGC
CGCCGCCGTA ACGATGATAA ACGTCAGGCG CAACAAGAAG CGAAGGCGCT GAATGTTGAA
GAGCAATCTG TTCAGGAAAC CGAACAGGAA GAACGTGTAC GTCCGGTTCA GCCGCGTCGT
AAACAGCGTC AGCTCAATCA GAAAGTGCGT TACGAGCAAA GCGTAGCCGA AGAAGCGGTA
GTCGCACCGG TGGTTGAAGA AACTGCCGCT GCCGAACCAA TTGTTCAGGA AGCTCCAGCT
CCACGCACAG AACTGGTGAA AGTCCCGCTG CCAGTCGTAG CGCAAACTGC ACCAGAACAG
CAAGAAGAGA ACAATGCTGA TAACCGTGAC AACGGTGGCA TGCCGCGTCG TTCTCGCCGC
TCGCCTCGTC ACCTGCGCGT GAGTGGTCAG CGTCGTCGTC GCTATCGTGA CGAGCGTTAT
CCAACCCAGT CGCCAATGCC GTTGACCGTA GCGTGCGCGT CTCCGGAACT GGCCTCTGGC
AAAGTCTGGA TCCGCTATCC AATTGTACGT CCGCAAGATG TACAAGTTGA AGAGCAGCGC
GAACAGGAAG AAGTACAAGT GCAGCCGATG GTGACTGAGG TCCCTGTCGC CGCCGCTGTC
GAACCGGTTG TTAGCGCGCC AGTTGTTGAA GAAATGGCTG AAGTCGTAGA AGCCCCCGTA
CCGGTTGCCG AACCGCAACC GGAAGTGGTT GAAACGACGC ATCCTGAAGT GATTGCCGCC
GCGGTAACTG AACAGCCGCA GGTGATTACC GAGTCTGATG TTGCCGTAGC CCAGGAAGTT
GCAGAACACG CAGAACCGGT GGTTGAACCG CAGGAAGAGA CGGCAGATAT TGAAGAAGTT
GCCGAAACTG CTGAGGTTGT GGTTGCAGAA CCTGAAGTTG TTGCTCAACC TGCCGCGCCA
GTCGTCGCTG AAGTCGCAGC AGAAGTTGAA ACGGTAGCCG CGGTTGAACC AGAGATCACC
GTTGAGCATA ACCACGCTAC CGCGCCAATG ACGCGCGCTC CGGCACCGGA ATATGTTCCG
GAGGCACCGC ATCACAGTGA CTGGCAGCGC CCTACTTTTG CCTTCGAAGG TAAAGGTGCC
GCAGGTGGTC ATACGGCAAC GCATCATGCC TCTGCCGCTC CTGCGCGTCC GCAACCTGTT
GAGTAA
 
Protein sequence
MKRMLINATQ QEELRVALVD GQRLYDLDIE SPGHEQKKAN IYKGKITRIE PSLEAAFVDY 
GAERHGFLPL KEIAREYFPA NYSAHGRPNI KDVLREGQEV IVQIDKEERG NKGAALTTFI
SLAGSYLVLM PNNPRAGGIS RRIEGDDRTE LKEALANLEL PEGMGLIVRT AGVGKSAEAL
QWDLSFRLKH WEAIKKAAES RPAPFLIHQE SNVIVRAFRD YLRQDIGEIL IDNPKVLELA
RQHIAALGRP DFSSKIKLYT GEIPLFSHYQ IESQIESAFQ REVRLPSGGS IVIDSTEALT
AIDINSARAT RGGDIEETAF NTNLEAADEI ARQLRLRDLG GLIVIDFIDM TPVRHQRAVE
NRLREAVRQD RARIQISHIS RFGLLEMSRQ RLSPSLGESS HHVCPRCSGT GTVRDNESLS
LSILRLIEEE ALKENTQEVH AIVPVPIASY LLNEKRSAVN AIETRQDGVR CVIVPNDQME
TPHYHVLRVR KGEETPTLSY MLPKLHEEAM ALPSEEEFAE RKRPEQPALA TFAMPDVPPA
PTPAEPAAPV VAPAPKAAPA TPAAPAQPGL LSRFFGALKA LFSGSEETKP TEQPAPKAEA
KPERQQDRRK PRQNNRRDRN ERRDTRSERT EGSDNREENR RNRRQAQQQT AETRESRQQA
EVTEKARTTD EQQAPRRERS RRRNDDKRQA QQEAKALNVE EQSVQETEQE ERVRPVQPRR
KQRQLNQKVR YEQSVAEEAV VAPVVEETAA AEPIVQEAPA PRTELVKVPL PVVAQTAPEQ
QEENNADNRD NGGMPRRSRR SPRHLRVSGQ RRRRYRDERY PTQSPMPLTV ACASPELASG
KVWIRYPIVR PQDVQVEEQR EQEEVQVQPM VTEVPVAAAV EPVVSAPVVE EMAEVVEAPV
PVAEPQPEVV ETTHPEVIAA AVTEQPQVIT ESDVAVAQEV AEHAEPVVEP QEETADIEEV
AETAEVVVAE PEVVAQPAAP VVAEVAAEVE TVAAVEPEIT VEHNHATAPM TRAPAPEYVP
EAPHHSDWQR PTFAFEGKGA AGGHTATHHA SAAPARPQPV E