| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SbBS512_E2209 |
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| Symbol | mfd |
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| ID | 6270815 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shigella boydii CDC 3083-94 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010658 |
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| Strand | + |
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| Start bp | 2007734 |
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| End bp | 2011180 |
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| Gene Length | 3447 bp |
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| Protein Length | 1148 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 641726231 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_001880716 |
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| Protein GI | 187730283 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.872306 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCTGAAC AATATCGTTA TACGCTGCCC GTCAAAGCGG GTGAGCAGCG TCTGCTGGGC
GAGTTAACCG GCGCAGCCTG TGCAACGCTG GTAGCGGAAA TTGCCGAACG TCACGCCGGT
CCGGTGGTAC TCATTGCACC AGATATGCAA AATGCTCTGC GTTTGCATGA TGAAATCAGT
CAGTTCACCG ATCAGATGGT GATGAATCTG GCGGACTGGG AAACTCTTCC CTACGACAGC
TTTTCGCCTC ATCAGGACAT TATCTCCTCG CGCCTTTCCA CCCTTTACCA GCTACCGACG
ATGCAGCGTG GCGTACTGAT TGTTCCGGTG AATACGCTTA TGCAGCGCGT TTGCCCACAC
AGTTTTCTCC ACGGTCATGC GCTGGTGATG AAAAAAGGTC AGCGCCTGTC ACGAGATGCA
TTACGAACCC AACTGGACAG CGCCGGTTAT CGCTATGTTG ACCAGGTGAT GGAGCACGGC
GAATACGCCA CGCGCGGCGC GTTGCTGGAT CTCTTCCCGA TGGGGAGTGA GCTGCCTTAT
CGTCTTGATT TCTTTGATGA TGAAATCGAC AGCCTGCGGG TGTTTGACGT CGACAGCCAG
CGCACGCTGG AGGAAGTAGA AGCGATCAAT CTGCTGCCCG CGCACGAATT TCCGACCGAT
AAAGCGGCAA TTGAACTGTT CCGCAGCCAG TGGCGCGATA CCTTCGAAGT GAAGCGCGAT
CCGGAACATA TTTACCAGCA AGTGAGTAAA GGCACATTAC CTGCCGGGAT CGAGTACTGG
CAGCCATTGT TCTTCAGCGA ACCACTGCCG CCGCTGTTCA GTTATTTCCC TGCCAATACC
TTGCTCGTGA ATACTGGCGA TCTGGAAACC AGTGCCGAAC GTTTCCAGGC TGACACGCTG
GCGCGTTTTG AGAATCGCGG CGTCGATCCG ATGCGCCCGC TGTTGCCACC ACAATCGCTC
TGGCTGCGGG TGGACGAGCT CTTCTCAGAG CTGAAAAACT GGCCCCGGGT GCAGCTAAAA
ACTAAACATT TACCGACAAA AGCCGCGAAT GCCAATTTAG GTTTCCAGAA ACTGCCAGAC
CTGGCCGTTC AGGCGCAACA AAAAGCGCCG CTGGATGCGC TGCGTAAGTT CCTCGAGACT
TTCGACGGTC CGGTGGTGTT CTCGGTAGAA AGTGAAGGTC GCCGTGAAGC GCTGGGTGAA
CTGCTCGCAC GAATTAAAAT TGCTCCGCAA CGCATTATGC GTCTTGATGA AGCCAGCGAC
CGTGGGCGTT ATCTGATGAT TGGCGCTGCC GAACATGGTT TTGTCGATAA GGTGCGTAAT
CTGGCGCTGA TCTGCGAAAG CGATCTGCTC GGTGAACGTG TTGCCCGCCG TCGTCAGGAT
TCTCGCCGCA CCATCAACCC CGATACACTG ATCCGTAACC TTGCGGAGCT GCATATTGGT
CAGCCGGTGG TCCATCTGGA GCACGGTGTC GGGCGCTATG CCGGAATGAC CACGCTCGAA
GCGGGCGGCA TTACTGGCGA GTATTTGATG CTCACCTATG CCAACGACGC CAAACTGTAT
GTTCCGGTGT CGTCACTGCA TCTGATTAGC CGTTACGCAG GTGGCGCGGA AGAAAACGCC
CCGCTGCATA AACTTGGCGG CGATGCGTGG TCACGCGCGC GGCAGAAAGC GGCGGAAAAA
GTGCGTGATG TGGCGGCGGA ATTGCTGGAT ATCTACGCGC AACGCGCCGC CAAAGAGGGC
TTCGCGTTTA AACACGATCG TGAGCAGTAT CAGTTGTTCT GCGACAGCTT CCCGTTTGAA
ACCACGCCGG ATCAGGCGCA GGCCATTAAT GCGGTACTTA GCGACATGTG TCAGCCGCTG
GCAATGGATC GTCTGGTGTG CGGCGATGTT GGCTTTGGTA AAACAGAAGT GGCGATGCGC
GCCGCTTTCC TGGCAGTAGA TAACCACAAG CAGGTGGCGG TGTTGGTGCC TACCACCCTT
CTCGCGCAGC AGCATTACGA CAACTTCCGC GACCGTTTCG CCAACTGGCC GGTACGTATC
GAAATGATCT CCCGTTTCCG CAGCGCCAAA GAGCAGACGC AAATCCTTGC GGAAGTGGCG
GAAGGGAAAA TCGATATTCT GATCGGTACG CACAAACTGC TGCAAAGTGA CGTCAAGTTT
AAAGATTTAG GCCTGCTGAT TGTCGATGAA GAACACCGCT TCGGGGTGCG TCATAAAGAG
CGCATTAAAG CGATGCGCGC GAACGTGGAT ATTCTGACGC TTACTGCAAC GCCGATCCCA
CGCACGCTGA ATATGGCAAT GAGCGGAATG CGTGACCTGT CGATTATCGC CACGCCGCCC
GCCCGTCGTC TGGCAGTTAA AACCTTTGTC CGTGAGTATG ACAGCCTGGT GGTCCGGGAG
GCGATCCTGC GTGAAATTTT GCGCGGGGGG CAGGTTTATT ATCTCTACAA TGATGTGGAA
AACATCCAGA AAGCTGCCGA ACGGCTGGCA GAACTGGTGC CAGAAGCGCG GATCGCCATC
GGTCACGGGC AGATGCGCGA GCGCGAACTG GAACGGGTGA TGAATGATTT CCATCATCAA
CGTTTCAACG TGCTGGTTTG TACAACCATT ATCGAAACCG GGATCGACAT CCCGACAGCC
AACACCATTA TCATTGAACG CGCGGATCAC TTCGGTCTGG CGCAGCTGCA CCAGTTACGC
GGTCGCGTCG GACGTTCACA TCATCAGGCA TATGCATGGC TGCTGACGCC GCATCCAAAA
GCGATGACTA CCGATGCACA AAAACGTCTT GAAGCGATTG CCTCGCTGGA AGATCTCGGT
GCAGGCTTTG CGCTGGCAAC GCACGATCTG GAGATCCGCG GCGCGGGTGA ACTGCTTGGC
GAAGAACAAA GTGGCTCAAT GGAAACCATC GGTTTCTCGC TGTATATGGA GTTGCTGGAA
AACGCCGTCG ATGCACTGAA AGCCGGACGC GAGCCGTCGC TGGAAGATCT CACCAGCCAG
CAAACAGAAG TCGAGCTGCG GATGCCGTCG CTATTGCCAG ATGATTTCAT TCCTGACGTG
AATACGCGTT TGTCGTTCTA TAAACGTATT GCCAGCGCCA AAACGGAAAA CGAACTGGAA
GAGATCAAAG TCGAGCTTAT CGATCGCTTC GGCCTGCTGC CGGATCCGGC GCGTACCCTG
CTGGATGTTG CCCGTCTGCG CCAGCAAGCG CAGAAACTGG GGATCAGGAA GCTGGAAGGT
AATGAGAAAG GCGGGGTGAT CGAATTTGCC GAGAAGAATC ACGTTAATCC GGCCTGGTTG
ATTGGTTTGC TGCAAAAACA GCCGCAGCAT TACCGCCTTG ATGGTCCGAC GCGCCTGAAA
TTTATTCAGG ATTTGAGTGA GCGGAAAACG CGTATCGAAT GGGTACGCCA GTTTATGCGT
GAACTGGAAG AGAACGCGAT CGCTTAA
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| Protein sequence | MPEQYRYTLP VKAGEQRLLG ELTGAACATL VAEIAERHAG PVVLIAPDMQ NALRLHDEIS
QFTDQMVMNL ADWETLPYDS FSPHQDIISS RLSTLYQLPT MQRGVLIVPV NTLMQRVCPH
SFLHGHALVM KKGQRLSRDA LRTQLDSAGY RYVDQVMEHG EYATRGALLD LFPMGSELPY
RLDFFDDEID SLRVFDVDSQ RTLEEVEAIN LLPAHEFPTD KAAIELFRSQ WRDTFEVKRD
PEHIYQQVSK GTLPAGIEYW QPLFFSEPLP PLFSYFPANT LLVNTGDLET SAERFQADTL
ARFENRGVDP MRPLLPPQSL WLRVDELFSE LKNWPRVQLK TKHLPTKAAN ANLGFQKLPD
LAVQAQQKAP LDALRKFLET FDGPVVFSVE SEGRREALGE LLARIKIAPQ RIMRLDEASD
RGRYLMIGAA EHGFVDKVRN LALICESDLL GERVARRRQD SRRTINPDTL IRNLAELHIG
QPVVHLEHGV GRYAGMTTLE AGGITGEYLM LTYANDAKLY VPVSSLHLIS RYAGGAEENA
PLHKLGGDAW SRARQKAAEK VRDVAAELLD IYAQRAAKEG FAFKHDREQY QLFCDSFPFE
TTPDQAQAIN AVLSDMCQPL AMDRLVCGDV GFGKTEVAMR AAFLAVDNHK QVAVLVPTTL
LAQQHYDNFR DRFANWPVRI EMISRFRSAK EQTQILAEVA EGKIDILIGT HKLLQSDVKF
KDLGLLIVDE EHRFGVRHKE RIKAMRANVD ILTLTATPIP RTLNMAMSGM RDLSIIATPP
ARRLAVKTFV REYDSLVVRE AILREILRGG QVYYLYNDVE NIQKAAERLA ELVPEARIAI
GHGQMREREL ERVMNDFHHQ RFNVLVCTTI IETGIDIPTA NTIIIERADH FGLAQLHQLR
GRVGRSHHQA YAWLLTPHPK AMTTDAQKRL EAIASLEDLG AGFALATHDL EIRGAGELLG
EEQSGSMETI GFSLYMELLE NAVDALKAGR EPSLEDLTSQ QTEVELRMPS LLPDDFIPDV
NTRLSFYKRI ASAKTENELE EIKVELIDRF GLLPDPARTL LDVARLRQQA QKLGIRKLEG
NEKGGVIEFA EKNHVNPAWL IGLLQKQPQH YRLDGPTRLK FIQDLSERKT RIEWVRQFMR
ELEENAIA
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