| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SbBS512_E2206 |
|---|
| Symbol | lolD |
|---|
| ID | 6272364 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shigella boydii CDC 3083-94 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010658 |
|---|
| Strand | - |
|---|
| Start bp | 2004378 |
|---|
| End bp | 2005079 |
|---|
| Gene Length | 702 bp |
|---|
| Protein Length | 233 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 641726228 |
|---|
| Product | lipoprotein transporter ATP-binding subunit |
|---|
| Protein accession | YP_001880713 |
|---|
| Protein GI | 187732074 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1136] ABC-type antimicrobial peptide transport system, ATPase component |
|---|
| TIGRFAM ID | [TIGR02211] lipoprotein releasing system, ATP-binding protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 0.165489 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATAAGA TCCTGTTGCA ATGCGACAAC CTGTGCAAAC GCTATCAGGA AGGCAGTGTG
CAAACCGATG TACTGCACAA TGTCAGTTTC AGCGTCGGCG AAGGTGAAAT GATGGCGATC
GTCGGTAGCT CTGGTTCCGG TAAAAGCACC TTGCTGCACC TGCTGGGCGG ACTGGATACG
CCAACCTCCG GCGATGTGAT CTTTAACGGT CAACCGATGA GCAAACTGTC GTCGGCAGCA
AAAGCAGAAC TGCGCAACCA GAAACTGGGC TTTATTTATC AGTTTCACCA CCTGCTGCCG
GATTTTACCG CCCTGGAAAA CGTGGCTATG CCGCTGCTGA TTGGCAAGAA AAAGCCCGCT
GAAATCAACA GCCGTGCACT GGAGATGTTA AAAGCGGTGG GGCTGGAGCA TCGTGCGAAT
CACCGCCCAT CTGAACTTTC TGGCGGCGAA CGCCAGCGTG TAGCGATTGC CCGTGCGCTG
GTCAATAATC CGCGTCTGGT ACTGGCGGAT GAGCCTACCG GTAACCTCGA TGCGCGTAAC
GCCGACAGCA TCTTCCAGTT GCTTGGGGAA TTGAATCGCT TGCAGGGCAC CGCCTTCCTG
GTGGTTACTC ACGACCTGCA ACTGGCGAAA CGTATGAGCC GCCAGTTAGA AATGCGTGAT
GGACGTCTGA CGGCGGAACT GAGCCTGATG GGGGCGGAGT AA
|
|---|
| Protein sequence | MNKILLQCDN LCKRYQEGSV QTDVLHNVSF SVGEGEMMAI VGSSGSGKST LLHLLGGLDT
PTSGDVIFNG QPMSKLSSAA KAELRNQKLG FIYQFHHLLP DFTALENVAM PLLIGKKKPA
EINSRALEML KAVGLEHRAN HRPSELSGGE RQRVAIARAL VNNPRLVLAD EPTGNLDARN
ADSIFQLLGE LNRLQGTAFL VVTHDLQLAK RMSRQLEMRD GRLTAELSLM GAE
|
|---|
| |