Gene SbBS512_E1858 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSbBS512_E1858 
Symbol 
ID6272612 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShigella boydii CDC 3083-94 
KingdomBacteria 
Replicon accessionNC_010658 
Strand
Start bp1701080 
End bp1702291 
Gene Length1212 bp 
Protein Length403 aa 
Translation table11 
GC content53% 
IMG OID641725923 
Productinner membrane transport protein YdhC 
Protein accessionYP_001880421 
Protein GI187730494 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID[TIGR00710] drug resistance transporter, Bcr/CflA subfamily
[TIGR00880] Multidrug resistance protein 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000000000000141458 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAACCTG GGAAAAGATT TTTAGTCTGG CTGGCGGGTT TGAGCGTACT CGGTTTTCTG 
GCAACCGATA TGTATCTGCC TGCTTTCGCC GCCATACAGG CCGACCTGCA AACGCCTGCG
TCTGCTGTCA GTGCCAGCCT TAGTCTGTTC CTTGCCGGTT TTGCCGCAGC CCAGCTTCTG
TGGGGGCCAC TCTCCGACCG TTATGGTCGT AAACCGGTGT TATTAATCGG CCTGACAATT
TTTGCGTTAG GTAGTCTGGG GATGCTGTGG GTAGAAAACG CCGCTACGCT GCTGGTATTG
CGTTTTGTAC AGGCTGTGGG TGTCTGCGCC GCGGCGGTTA TCTGGCAAGC GTTAGTGACG
GATTATTATC CTTCACAGAA AGTTAACCGA ATTTTTGCGA CCATCATGCC GCTGGTGGGT
CTATCTCCGG CCCTGGCTCC TCTGTTAGGA AGCTGGCTGC TGGTCCATTT TTCCTGGCAG
GCGATTTTCG CCACCCTGTT TGCCATTACC GTGGTGCTGA TTCTGCCTAT TTTCTGGCTC
AAACCCACGA CGAAGGCCGG TAACAATAGT CAGGATGGTC TGACCTTTAC CGACCTGCTA
CGTTCTAAAA CCTATCGCGG CAACGTGCTG ATATACGCGG CCTGTTCAGC CAGTTTTTTT
GCATGGCTGA CCGGTTCACC GTTCATCCTT AGTGAAATGG GCTACAGCCC GGCAGTTATT
GGTTTAAGTT ATGTCCCGCA AACTATCGCG TTTCTGATTG GTGGTTATGG CTGTCGCGCC
GCGCTGCAGA AATGGCAAGG CAAGCAGTTA TTACCGTGGT TGCTGGTGCT GTTTGCTGTC
AGCGTCATTG CGACCTGGAC TGCGGGCTTC ATTAGCCATG TGTCGCTGGT CGAAATCCTG
ATCCCATTCT GTGTGATGGC GATTGCCAAT GGCGCGATCT ACCCTATTGT TGTCGCCCAG
GCGCTGCGTC CCTTCCCACA CGCAACTGGT CGCGCCGCAG CGTTGCAGAA CACTCTACAA
CTGGGTCTGT GCTTCCTCGC AAGTCTGGTA GTTTCCTGGC TTATTAGTAT CAGCACGCCA
TTGCTCACCA CCACCAGCGT GATGTTATCA ACAGTAGTGC TGGTCGCGCT GGGTTACATG
ATGCAACGTT GTGAAGAAGC TGGCTGCCAG AATCATGGCA ATGCCGAAGT CGCTCATAGC
GAATCACACT GA
 
Protein sequence
MQPGKRFLVW LAGLSVLGFL ATDMYLPAFA AIQADLQTPA SAVSASLSLF LAGFAAAQLL 
WGPLSDRYGR KPVLLIGLTI FALGSLGMLW VENAATLLVL RFVQAVGVCA AAVIWQALVT
DYYPSQKVNR IFATIMPLVG LSPALAPLLG SWLLVHFSWQ AIFATLFAIT VVLILPIFWL
KPTTKAGNNS QDGLTFTDLL RSKTYRGNVL IYAACSASFF AWLTGSPFIL SEMGYSPAVI
GLSYVPQTIA FLIGGYGCRA ALQKWQGKQL LPWLLVLFAV SVIATWTAGF ISHVSLVEIL
IPFCVMAIAN GAIYPIVVAQ ALRPFPHATG RAAALQNTLQ LGLCFLASLV VSWLISISTP
LLTTTSVMLS TVVLVALGYM MQRCEEAGCQ NHGNAEVAHS ESH