Gene SbBS512_E1830 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSbBS512_E1830 
SymbolpdxH 
ID6271247 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShigella boydii CDC 3083-94 
KingdomBacteria 
Replicon accessionNC_010658 
Strand
Start bp1674662 
End bp1675318 
Gene Length657 bp 
Protein Length218 aa 
Translation table11 
GC content51% 
IMG OID641725896 
Productpyridoxamine 5'-phosphate oxidase 
Protein accessionYP_001880394 
Protein GI187733381 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0259] Pyridoxamine-phosphate oxidase 
TIGRFAM ID[TIGR00558] pyridoxamine-phosphate oxidase 


Plasmid Coverage information

Num covering plasmid clones36 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCTGATA ACGACGAATT GCAGCAAATC GCGCATCTGC GCCGTGAATA CACCAAAGGC 
GGGTTACGCC GTCGCGATCT TCCCGCCGAT CCATTAACCC TTTTTGAACG TTGGCTCTCT
CAGGCGTGTG AAGCCAAACT GGCAGACCCT ACCGCGATGG TGGTCGCTAC CGTGGATGAA
CATGCTCAGC CTTATCAACG CATCGTTTTA CTCAAACATT ACGACGAAAA AGGCATGGTG
TTTTACACCA ACCTCGGTAG CCGTAAAGCA CATCAAATTG AAAATAATCC GCGCGTTAGC
CTGCTGTTCC CGTGGCATAC CCTTGAACGC CAGGTGATGG TGATCGGTAA AGCAGAACGA
CTTTCGACTC TCGAAGTGAT GAAATATTTT CATAGCCGCC CGCGTGATAG CCAGATTGGT
GCATGGGTTT CGAAGCAGTC CAGTCGCATT TCTGCCCGCG GTATCCTTGA AAGTAAATTC
CTGGAGCTGA AGCAGAAGTT TCAACAGGGC GAAGTGCCAT TGCCGAGCTT TTGGGGCGGT
TTTCGCGTCA GCCTTGAACA GATTGAGTTC TGGCAGGGCG GTGAGCATCG CCTGCATGAC
CGCTTTTTGT ACCAGCGAGA AAATGATGCG TGGAAGATTG ATCGTCTTGC ACCCTGA
 
Protein sequence
MSDNDELQQI AHLRREYTKG GLRRRDLPAD PLTLFERWLS QACEAKLADP TAMVVATVDE 
HAQPYQRIVL LKHYDEKGMV FYTNLGSRKA HQIENNPRVS LLFPWHTLER QVMVIGKAER
LSTLEVMKYF HSRPRDSQIG AWVSKQSSRI SARGILESKF LELKQKFQQG EVPLPSFWGG
FRVSLEQIEF WQGGEHRLHD RFLYQRENDA WKIDRLAP