| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SbBS512_E1773 |
|---|
| Symbol | ynfE |
|---|
| ID | 6269858 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shigella boydii CDC 3083-94 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010658 |
|---|
| Strand | + |
|---|
| Start bp | 1614436 |
|---|
| End bp | 1616862 |
|---|
| Gene Length | 2427 bp |
|---|
| Protein Length | 808 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 641725844 |
|---|
| Product | anaerobic dimethyl sulfoxide reductase, A subunit YnfE |
|---|
| Protein accession | YP_001880342 |
|---|
| Protein GI | 187733706 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0243] Anaerobic dehydrogenases, typically selenocysteine-containing |
|---|
| TIGRFAM ID | [TIGR00509] molybdopterin guanine dinucleotide-containing S/N-oxide reductases
[TIGR02166] anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 36 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCCAAAA ATGACCGAAT GGTGGGCATC AGCCGCAGAA CACTCGTTAA ATCAACCGCG
ATAGGTTCTC TGGCGCTGGC TGCAGGCGGT TTTTCTTTAC CGTTCACCCT GCGCAGTGCA
GCGGCAACGG TACAACAGGC CAGCGAAAAA GTGATCTGGG GTGCCTGTTC CGTCAACTGT
GGTAGCCGCT GTGCACTTCG TCTACATGTT AAAGATAATG AAGTGACCTG GGTGGAAACT
GACAATACCG GCAGCGATGA GTACGGCAAC CATCAGGTAC GCGCCTGTTT GCGCGGTCGC
TCCATCCGCC GGCGTATTAA TCATCCCGAT CGCTTGAATT ACCCAATGAA ACGCGTGGGT
AAACGCGGTG AAGGCAAATT CGAACGGATT AGCTGGGATG AAGCCCTGGA TACTATCGCC
AGTAGCCTGA AAAAAACCGT CGAACAATAT GGCAATGAGG CTGTATATAT TCAGTACTCT
TCGGGGATTG TTGGCGGCAA TATGACCCGC TCTTCGCCAT CAGCCTCGGC GGTCAAACGC
CTGATGAACT GCTACGGCTG TTCACTCAAT CAGTATGGCT CCTACAGCAC CGAGCAAATT
TCCTGTGCCA TGCCCTACAC CTACGGCAGT AATGATGGCA ACAGCACCAC GGATATTGAA
AACAGCAAGC TGGTCGTGAT GTTTGGTAAC AACCCGGCAG AAACCCGCAT GAGCGGCGGT
GGCATCACTT ATCTTCTTGA AAAAGCGCGC GAGAAATCGA ACGCCAAAAT GATTGTTATC
GATCCGCGAT ATACCGATAC GGCTGCTGGT CGTGAAGATG AATGGCTTCC TATTCGCCCG
GGCACCGATG CCGCGCTGGT TGCGGGTATT GCCTGGGTAT TGATTAACGA AAATCTCGTT
GATCAACCTT TTCTCGATAA ATACTGCGTC GGCTATGACG AAAAAACCTT ACCCGCAGAT
GCACCAAAAA ATGGTCACTA TAAAGCCTAT ATTCTTGGTG AAGGTGATGA TAATACAGCG
AAAACGCCGC AGTGGGCTTC GCAAATTACC GGTATCCCGG TGGACCGTAT CATCAAACTG
GCGCGTGAAA TTGGCACAGC AAAACCCGCT TATATCTGCC AGGGCTGGGG GCCGCAACGC
CAGGCAAACG GCGAACTGAC TGCACGCGCT ATTGCTATGT TGCCTATTTT GACGGGCAAT
GTCGGCATCA GCGGCGGAAA TAGTGGCGCG AGTGAATCGA CCTATACCAT TACCATAGAA
CGCCTGCCGG TGCTGGATAA TCCGGTCAAA ACGTCAATCT CCTGCTTCAG CTGGACAGAT
GCTATCGATC ATGGTCCGCA AATGACGGCA ATCCGCGACG GCGTCCGCGG CAAAGATAAA
CTGGATGTGC CCATTAAGTT CATCTGGAAC TACGCGGGAA ATACCCTCGT TAATCAGCAT
TCTGACATCA ACAAAACGCA TGAAATTCTG CAGGACGAAT CGAAATGCGA AATGATTGTG
GTCATCGAAA ACTTTATGAC CTCATCGGCA AAATATGCCG ACATTCTGCT GCCAGACCTG
ATGACCGTTG AGCAGGAAGA TATTATTCCT AACGACTACG CCGGTAACAT GGGATATCTC
ATTTTCCTCC AGCCTGTCAC CAGCGAAAAA TTCGAACGCA AACCGATTTA CTGGATCCTG
AGTGAAGTCG CGAAACGTCT TGGACCTGAC GTCTATCAAA AGTTCACAGA AGGTCGCACG
CAGGAACAAT GGTTACAACA TCTGTACGCC AAAATGCTTG CCAAAGATCC GGCGTTACCG
TCTTACGACG AACTGAAAAA AATGGGTATC TATAAGCGTA AAGATCCCAA TGGCCATTTT
GTCGCCTACA AAGCATTTCG TGACGACCCC GAGGCAAATC CACTTAAAAC GCCTTCCGGT
AAGATTGAAA TTTATTCCAG CAGGCTGGCG GAAATTGCCC GTACCTGGGA ACTGGAAAAA
GATGAAGTGA TAAGCCCATT GCCAGTTTAT GCCTCAACCT TTGAAGGCTG GAACTCCCCT
GAACGTAGAA CCTTCCCACT GCAACTGTTT GGTTTCCATT ACAAATCCCG TACTCACTCG
ACCTACGGCA ATATTGATCT CCTGAAGGCT GCCTGCCGTC AGGAGGTGTG GATCAACCCT
ATAGATGCGC AGAAACGTGG GATTGCCAAC GGCGATATGG TGCGGGTGTT TAACCATCGT
GGCGAAGTTC GGCTACCAGC CAAAGTAACA CCACGTATTC TCCCTGGAGT TAGCGCTATG
GGCCAGGGAG CCTGGCACGA GGCCAATATG TCTGGCGATA AAATCGACCA TGGCGGCTGT
GTGAATACGC TAACCACTCT GCGCCCTTCA CCACTGGCGA AGGGAAACCC GCAGCACACT
AATCTGGTCG AGATCGAAAA AATATAA
|
|---|
| Protein sequence | MSKNDRMVGI SRRTLVKSTA IGSLALAAGG FSLPFTLRSA AATVQQASEK VIWGACSVNC
GSRCALRLHV KDNEVTWVET DNTGSDEYGN HQVRACLRGR SIRRRINHPD RLNYPMKRVG
KRGEGKFERI SWDEALDTIA SSLKKTVEQY GNEAVYIQYS SGIVGGNMTR SSPSASAVKR
LMNCYGCSLN QYGSYSTEQI SCAMPYTYGS NDGNSTTDIE NSKLVVMFGN NPAETRMSGG
GITYLLEKAR EKSNAKMIVI DPRYTDTAAG REDEWLPIRP GTDAALVAGI AWVLINENLV
DQPFLDKYCV GYDEKTLPAD APKNGHYKAY ILGEGDDNTA KTPQWASQIT GIPVDRIIKL
AREIGTAKPA YICQGWGPQR QANGELTARA IAMLPILTGN VGISGGNSGA SESTYTITIE
RLPVLDNPVK TSISCFSWTD AIDHGPQMTA IRDGVRGKDK LDVPIKFIWN YAGNTLVNQH
SDINKTHEIL QDESKCEMIV VIENFMTSSA KYADILLPDL MTVEQEDIIP NDYAGNMGYL
IFLQPVTSEK FERKPIYWIL SEVAKRLGPD VYQKFTEGRT QEQWLQHLYA KMLAKDPALP
SYDELKKMGI YKRKDPNGHF VAYKAFRDDP EANPLKTPSG KIEIYSSRLA EIARTWELEK
DEVISPLPVY ASTFEGWNSP ERRTFPLQLF GFHYKSRTHS TYGNIDLLKA ACRQEVWINP
IDAQKRGIAN GDMVRVFNHR GEVRLPAKVT PRILPGVSAM GQGAWHEANM SGDKIDHGGC
VNTLTTLRPS PLAKGNPQHT NLVEIEKI
|
|---|
| |