| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SbBS512_E1498 |
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| Symbol | topA |
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| ID | 6268882 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shigella boydii CDC 3083-94 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010658 |
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| Strand | + |
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| Start bp | 1367916 |
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| End bp | 1370513 |
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| Gene Length | 2598 bp |
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| Protein Length | 865 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 641725597 |
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| Product | DNA topoisomerase I |
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| Protein accession | YP_001880103 |
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| Protein GI | 187733938 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA
[COG0551] Zn-finger domain associated with topoisomerase type I |
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| TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGTAAAG CTCTTGTCAT CGTTGAGTCC CCGGCAAAAG CCAAAACGAT CAACAAGTAT
CTGGGTAGTG ACTACGTGGT GAAATCCAGC GTCGGTCACA TCCGCGATTT GCCGACCAGT
GGCTCAGCTG CCAAAAAGAG TGCCGACTCT ACCTCCACCA AGACGGCTAA AAAGCCTAAA
AAGGATGAAC GTGGCGCTCT CGTCAACCGT ATGGGGGTTG ACCCGTGGCA CAATTGGGAG
GCGCACTATG AAGTGTTGCC TGGTAAAGAG AAGGTCGTCT CTGAACTGAA ACAACTGGCT
GAAAAAGCCG ACCACATCTA TCTCGCAACC GACCTTGACC GCGAAGGGGA AGCCATTGCA
TGGCACCTGC GGGAAGTGAT TGGGGGTGAT GATGCGCGCT ATAGCCGAGT GGTGTTTAAC
GAAATTACTA AAAACGCGAT CCGCCAGGCA TTTAACAAAC CGGGTGAGCT GAATATTGAT
CGTGTTAATG CCCAGCAGGC GCGTCGCTTT ATGGACCGCG TGGTGGGGTA TATGGTTTCG
CCGCTGCTAT GGAAAAAGAT CGCTCGTGGT CTGTCTGCCG GTCGTGTGCA GTCGGTGGCG
GTTCGCCTGG TGGTCGAGCG TGAGCGTGAA ATTAAAGCGT TCGTGCCGGA AGAGTTCTGG
GAAGTCGATG CCAGCACGAC CACGCCATCT GGTGAAGCGT TGGCGTTACA GGTGACTCAT
CAGAACGACA AACCGTTCCG TCCGGTCAAC AAAGAACAAA CTCAGGCTGC GGTAAGTCTG
CTGGAAAAAG CGCGCTACAG CGTGCTGGAA CGTGAAGACA AACCGACAAC CACTAAACCT
GGCGCTCCTT TTATTACCTC TACGCTGCAA CAAGCTGCCA GCACCCGTCT TGGATTTGGC
GTGAAAAAAA CCATGATGAT GGCGCAGCGT TTGTATGAAG CAGGCTATAT CACTTACATG
CGTACCGACT CCACTAACCT GAGTCAGGAC GCGGTAAATA TGGTTCGCGG TTATATCAGC
GATAATTTTG GTAAGAAATA TCTGCCGGAA AGTCCGAATC AGTACGCCAG CAAAGAAAAC
TCACAGGAAG CGCACGAAGC GATTCGTCCT TCTGACGTCA ATGTGATGGC GGAATCGCTG
AAGGATATGG AAGCAGATGC GCAGAAACTG TACCAGTTAA TCTGGCGTCA GTTCGTAGCC
TGCCAGATGA CCCCAGCGAA ATATGACTCC ACGACGCTGA CCGTTGGTGC GGGCGATTTC
CGCCTGAAAG CACGCGGTCG TATTTTGCGT TTTGATGGCT GGACAAAAGT GATGCCTGCG
TTGCGTAAAG GCGATGAAGA TCGCATCTTA CCAGCAGTTA ATAAAGGCGA TGCTCTGACG
CTCGTTGAAC TTACACCAGC CCAGCACTTT ACCAAGCCGC CAGCCCGTTT CAGTGAAGCA
TCGCTGGTTA AAGAGCTGGA AAAACGCGGT ATCGGTCGTC CGTCTACCTA TGCGTCGATC
ATTTCGACCA TTCAGGATCG TGGCTACGTG CGAGTAGAAA ATCGTCGTTT CTATGCGGAA
AAAATGGGCG AAATCGTCAC CGATCGCCTT GAAGAAAATT TCCGCGAGTT AATGAACTAC
GACTTCACCG CACAGATGGA AAACAGCCTC GACCAGGTGG CAAATCACGA AGCAGAGTGG
AAAGCTGTAC TGGATCACTT CTTCTCGGAT TTCACCCAGC AGTTAGATAA AGCTGAAAAA
GATCCGGAAG AGGGTGGTAT GCGCCCGAAC CAGATGGTTC TGACCAGCAT TGACTGCCCG
ACTTGTGGTC GCAAAATGGG GATTCGCACA GCGAGCACCG GGGTATTCCT TGGCTGTTCT
GGTTATGCGC TGCCGCCGAA AGAGCGTTGC AAAACCACCA TTAACCTGGT GCCGGAAAAC
GAAGTGCTGA ACGTACTGGA AGGCGAAGAC GCTGAAACCA ACGCGCTGCG CGCAAAACGT
CGTTGCCCGA AATGCGGCAC GGCGATGGAC AGCTATCTCA TCGATCCGAA ACGTAAGTTG
CATGTCTGTG GTAATAACCC AACCTGCGAC GGTTACGAGA TCGAAGAGGG CGAATTCCGC
ATTAAAGGTT ATGACGGCCC GATCGTTGAG TGTGAAAAAT GTGGCTCTGA AATGCACCTG
AAAATGGGGC GTTTCGGTAA ATACATGGCC TGCACCAACG AAGAGTGTAA AAACACACGT
AAGATTTTAC GTAACGGCGA AGTGGCACCA CCGAAAGAAG ATCCGGTGCC ATTACCTGAG
CTGCCGTGCG AAAAATCAGA TGCTTATTTC GTGCTGCGTG ACGGCGCTGC GGGTGTTTTC
CTGGCTGCCA ACACTTTCCC GAAATCGCGT GAAACGCGTG CGCCACTGGT GGAAGAGCTT
TATCGCTTCC GCGACCGTCT GCCGGAAAAA CTGCGTTATC TGGCCGATGC GCCACAGCAG
GATCCGGAAG GTAATAAGAC CATGGTTCGC TTTAGCCGTA AAACCAAACA GCAATATGTC
TCTTCGGAAA AAGACGGAAA GGCGACTGGC TGGTCAGCAT TTTATGTTGA TGGCAAATGG
GTTGAAGGAA AAAAATAA
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| Protein sequence | MGKALVIVES PAKAKTINKY LGSDYVVKSS VGHIRDLPTS GSAAKKSADS TSTKTAKKPK
KDERGALVNR MGVDPWHNWE AHYEVLPGKE KVVSELKQLA EKADHIYLAT DLDREGEAIA
WHLREVIGGD DARYSRVVFN EITKNAIRQA FNKPGELNID RVNAQQARRF MDRVVGYMVS
PLLWKKIARG LSAGRVQSVA VRLVVERERE IKAFVPEEFW EVDASTTTPS GEALALQVTH
QNDKPFRPVN KEQTQAAVSL LEKARYSVLE REDKPTTTKP GAPFITSTLQ QAASTRLGFG
VKKTMMMAQR LYEAGYITYM RTDSTNLSQD AVNMVRGYIS DNFGKKYLPE SPNQYASKEN
SQEAHEAIRP SDVNVMAESL KDMEADAQKL YQLIWRQFVA CQMTPAKYDS TTLTVGAGDF
RLKARGRILR FDGWTKVMPA LRKGDEDRIL PAVNKGDALT LVELTPAQHF TKPPARFSEA
SLVKELEKRG IGRPSTYASI ISTIQDRGYV RVENRRFYAE KMGEIVTDRL EENFRELMNY
DFTAQMENSL DQVANHEAEW KAVLDHFFSD FTQQLDKAEK DPEEGGMRPN QMVLTSIDCP
TCGRKMGIRT ASTGVFLGCS GYALPPKERC KTTINLVPEN EVLNVLEGED AETNALRAKR
RCPKCGTAMD SYLIDPKRKL HVCGNNPTCD GYEIEEGEFR IKGYDGPIVE CEKCGSEMHL
KMGRFGKYMA CTNEECKNTR KILRNGEVAP PKEDPVPLPE LPCEKSDAYF VLRDGAAGVF
LAANTFPKSR ETRAPLVEEL YRFRDRLPEK LRYLADAPQQ DPEGNKTMVR FSRKTKQQYV
SSEKDGKATG WSAFYVDGKW VEGKK
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