Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SbBS512_E1425 |
Symbol | ompW |
ID | 6270592 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shigella boydii CDC 3083-94 |
Kingdom | Bacteria |
Replicon accession | NC_010658 |
Strand | + |
Start bp | 1302973 |
End bp | 1303611 |
Gene Length | 639 bp |
Protein Length | 212 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 641725526 |
Product | outer membrane protein W |
Protein accession | YP_001880035 |
Protein GI | 187730073 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3047] Outer membrane protein W |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 0.0528971 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAAAAAGT TAACAGTGGC GGCTTTGGCA GTAACAACTC TTCTCTCTGG CAGTGCCTTT GCGCATGAAG CAGGCGAATT TTTTATGCGT GCAGGTTCTG CAACCGTACG TCCAACAGAA GGTGCTGGTG GTACGTTAGG AAGTCTGGGT GGATTCAGCG TGACCAATAA CACTCAACTG GGCTTGACGT TTACTTATAT GGCGACCGAC AACATTGGTG TGGAATTACT GGCAGCGACG CCGTTCCGCC ATAAAATCGG CACCCGGGCG ACCGGCGATA TTGCAACCGT TCACCATCTG CCACCAACAC TGATGGCGCA GTGGTATTTT GGTGATGCCA GCAGCAAATT CCGTCCTTAC GTTGGGGCAG GTATTAACTA CACCACCTTC TTTGATAATG GATTTAACGA TCATGGCAAA GAGGCAGGGC TTTCCGATCT CAGTCTGAAA GATTCCTGGG GAGCTGCCGG GCAGGTGGGG GTTGATTATC TGATTAACCG TGACTGGTTG GTTAACATGT CAGTGTGGTA CATGGATATC GATACCACGG CTAAGTACAA ATCTGGTGTT ACTACCGTAA AAGACTCGGT ACGACTGGAT CCGTGGGTGT TTATGTTCTC CGCAGGATAT CGTTTTTAA
|
Protein sequence | MKKLTVAALA VTTLLSGSAF AHEAGEFFMR AGSATVRPTE GAGGTLGSLG GFSVTNNTQL GLTFTYMATD NIGVELLAAT PFRHKIGTRA TGDIATVHHL PPTLMAQWYF GDASSKFRPY VGAGINYTTF FDNGFNDHGK EAGLSDLSLK DSWGAAGQVG VDYLINRDWL VNMSVWYMDI DTTAKYKSGV TTVKDSVRLD PWVFMFSAGY RF
|
| |