| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SbBS512_E1391 |
|---|
| Symbol | narK |
|---|
| ID | 6272281 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shigella boydii CDC 3083-94 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010658 |
|---|
| Strand | + |
|---|
| Start bp | 1267498 |
|---|
| End bp | 1268889 |
|---|
| Gene Length | 1392 bp |
|---|
| Protein Length | 463 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 641725497 |
|---|
| Product | nitrite extrusion protein 1 |
|---|
| Protein accession | YP_001880007 |
|---|
| Protein GI | 187732737 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG2223] Nitrate/nitrite transporter |
|---|
| TIGRFAM ID | [TIGR00886] nitrite extrusion protein (nitrite facilitator) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.00798499 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCACT CATCCGCCCC CGAAAGGGCT ACTGGAGCTG TCATTACAGA TTGGCGACCG
GAAGATCCTG CGTTCTGGCA ACAACGCGGT CAACGTATTG CCAGCCGTAA CCTGTGGATT
TCCGTTCCCT GTCTGCTGCT GGCGTTTTGC GTATGGATGT TGTTCAGCGC TGTTGCGGTG
AACTTACCGA AAGTCGGTTT TAATTTTACG ACCGATCAGC TATTTATGTT GACTGCGCTG
CCTTCGGTTT CTGGCGCGTT ATTACGTGTT CCATACTCCT TTATGGTTCC TATCTTCGGT
GGTCGTCGCT GGACGGCGTT CAGCACCGGT ATTCTGATTA TTCCTTGCGT CTGGCTGGGT
TTTGCCGTGC AGGATACCTC CACGCCTTAT AGCGTCTTCA TCATCATCTC TCTGCTATGC
GGCTTTGCTG GCGCGAACTT CGCATCCAGT ATGGCAAACA TCAGCTTCTT CTTTCCGAAA
CAGAAGCAGG GTGGCGCGCT GGGTCTGAAT GGTGGTCTGG GAAACATGGG CGTCAGCGTC
ATGCAGTTGG TTGCTCCGCT GGTGGTATCA CTGTCGATTT TCGCAGTATT TGGTAGCCAG
GGCGTCAAAC AGCCGGATGG GACTGAGCTG TATCTGGCGA ATGCGTCCTG GATATGGGTG
CCGTTCCTTG CCATCTTCAC CATTGCGGCG TGGTTTGGCA TGAACGATCT TGCTACCTCG
AAAGCCTCCA TCAAGGAGCA GTTGCCGGTA CTCAAACGGG GTCATCTGTG GATTATGAGC
CTGCTGTATC TGGCAACCTT CGGCTCCTTC ATCGGCTTCT CCGCGGGCTT TGCAATGCTG
TCAAAAACGC AGTTCCCGGA TGTTCAGATT CTGCAATACG CTTTCTTCGG GCCGTTTATT
GGTGCGCTGG CGCGTTCTGC AGGTGGTGCA TTATCTGACC GTCTGGGCGG AACTCGTGTC
ACGCTGGTGA ACTTTATTCT GATGGCGATT TTCAGCGGCC TGCTGTTCCT GACCTTACCG
ACTGACGGGC AGGGCGGAAG CTTCATGGCG TTCTTCGCGG TCTTCCTGGC GCTGTTCCTG
ACAGCTGGGC TGGGTAGTGG TTCCACTTTC CAGATGATTT CAGTGATCTT CCGTAAACTG
ACAATGGATC GCGTGAAAGC AGAAGGGGGT TCTGACGAAC GTGCGATGCG TGAAGCGGCA
ACCGACACGG CGGCGGCGCT GGGTTTCATC TCTGCGATTG GCGCGATTGG TGGCTTCTTT
ATCCCGAAAG CGTTTGGTAG CTCGCTGGCA TTAACGGGTT CGCCAGTCGG CGCAATGAAG
GTATTTTTGA TTTTCTATAT CGCCTGCGTA GTGATTACCT GGGCGGTATA TGGTCGGCAT
TCTAAAAAAT AA
|
|---|
| Protein sequence | MSHSSAPERA TGAVITDWRP EDPAFWQQRG QRIASRNLWI SVPCLLLAFC VWMLFSAVAV
NLPKVGFNFT TDQLFMLTAL PSVSGALLRV PYSFMVPIFG GRRWTAFSTG ILIIPCVWLG
FAVQDTSTPY SVFIIISLLC GFAGANFASS MANISFFFPK QKQGGALGLN GGLGNMGVSV
MQLVAPLVVS LSIFAVFGSQ GVKQPDGTEL YLANASWIWV PFLAIFTIAA WFGMNDLATS
KASIKEQLPV LKRGHLWIMS LLYLATFGSF IGFSAGFAML SKTQFPDVQI LQYAFFGPFI
GALARSAGGA LSDRLGGTRV TLVNFILMAI FSGLLFLTLP TDGQGGSFMA FFAVFLALFL
TAGLGSGSTF QMISVIFRKL TMDRVKAEGG SDERAMREAA TDTAAALGFI SAIGAIGGFF
IPKAFGSSLA LTGSPVGAMK VFLIFYIACV VITWAVYGRH SKK
|
|---|
| |