| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SbBS512_E1165 |
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| Symbol | |
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| ID | 6271498 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shigella boydii CDC 3083-94 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010658 |
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| Strand | - |
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| Start bp | 1063487 |
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| End bp | 1066804 |
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| Gene Length | 3318 bp |
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| Protein Length | 1105 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 641725298 |
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| Product | putative sensor protein |
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| Protein accession | YP_001879812 |
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| Protein GI | 187730854 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3447] Predicted integral membrane sensor domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.807956 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCAAAC AATCACAGCA TGTATTAATT GCCCTGCCCC ACCCGCTGCT TCACCTGGTC
AGTTTAGGTT TAGTCTCGTT TATCTTTACC CTTTTCTCGC TTGAGCTTTC GCAGTTTGGC
ACCCAACTCG CCCCACTGTG GTTCCCGACG TCCATCATGA TGGTGGCGTT TTATCGCCAT
GCCGGGCGCA TGTGGCCGGG AATTGCGCTG AGCTGTTCGC TGGGAAATAT CGCCGCATCC
ATCCTGCTTT TTTCCACCAG CTCGCTGAAC ATGACCTGGA CGACCATCAA TATTGTTGAA
GCCGTGGTCG GGGCAGTGCT GCTACGTAAA TTGCTGCCGT GGTATAACCC CTTGCAAAAT
CTGGCTGACT GGCTGCGTCT GGCACTCGGC AGCGCCATTG TTCCGCCTCT GTTGGGGGGG
GGTCTGGTTG TCCTGCTGAC GGCCGGAGAC GATCCTCTCA GGGCATTTTT GATATGGGTA
CTGTCAGAAT CCATCGGCGC TCTGGCACTG GTGCCGCTGG GATTGTTATT TAAACCACAC
TATCTGCTGC GCCATCGCAA CCCACGGTTG CTTTTTGAGT CGCTGCTCAC GTTAGCCATC
ACGCTGACGT TAAGCTGGCT TTCTATGTTG TACCTGCCGT GGCCTTTTAC TTTCATTATT
GTGCTGTTGA TGTGGAGCGC CGTGCGCCTG CCACGAATGG AAGCCTTTTT GATCTTCCTT
ACCACGGTGA TGATGGTGTC GCTGATGATG GCCGCGGATC CCTCCCTGCT TGCTACGCCG
CGTACATACC TGATGAGCCA TATGCCGTGG CTACCGTTTT TGCTGATCCT GCTGCCCGCC
AACATCATGA CGATGGTGAT GTATGCCTTT CGTGCGGAAC GCAAACACAT TTCCGAAAGC
GAAACCCGTT TTCGGAACGC CATGGAATAT TCCGCTATCG GTATGGCGTT AGTGGGCACC
GAGGGACAAT GGCTGCAAAC CAACAAAGCG CTCTGCCAGT TTCTCGGGTA CAGTCAGGAA
GAGCTGCGCG GACTCACCTT TCAGCAACTG ACCTGGCCGG AGGATCTCAA TAAAGATCTC
CAACAGGTTG AAAAGCTGAT AAGCGGTGAA ATAAACACCT ATTCAATGGA AAAACGCTAC
TACAACCGCA ATGGCGATGT TGTCTGGGCG TTGCTTGCCG TCTCACTGGT GCGCCACACG
GATGGCACGC CGCTCTATTT TATCGCTCAG ATTGAAGACA TTAACGAGCT AAAACGCACC
GAACAGGTGA ATCAGCAACT GATGGAGCGC ATCACGCTGG CTAACGAAGC GGGCGGGATT
GGCATCTGGG AGTGGGAGCT GAAGCCGAAT ATTTTTAGCT GGGATAAGCG GATGTTCGAG
CTGTATGAAA TTCCTCCGCA TATCAAACCG AACTGGCAGG TGTGGTACGA GTGCGTGCTG
CCGGAAGATC GCCAGCATGC CGAAAAAGTG ATTCGTGATT CGTTGCAATC ACGCTCGCCC
TTTAAGCTGG AATTTCGCAT TACCGTAAAA GACGGTATTC GCCATATCCG CGCCCTCGCC
AACCGGGTAC TGAATAAAGA AGGCGAAGTC GAACGCCTGC TCGGCATTAA TATGGATATG
ACCGAGGTTA AACAGCTTAA CGAGGCATTG TTTCAGGAAA AAGAGCGCCT GCACATTACG
CTTGATTCCA TCGGTGAAGC CGTGGTCTGT ATTGATATGG CGATGAAAAT TACCTTTATG
AATCCAGTGG CGGAGAAGAT GAGCGGCTGG ACGCAGGAAG AAGCGTTAGG TGTTCCGCTC
CTGACGGTGT TGCATATTAC TTTTGGCGAC AACGGACCAT TAATGGAGAA CATTTACAGT
GCCGACACCT CACGTTCCGC GATTGAACAA GATGTGGTGT TGCACTGTCG GAGCGGCGGC
AGCTACGACG TGCATTACAG TATTACGCCG TTAAGTACTC TGGACGGCAG CAATATTGGT
TCGGTTCTGG TGATTCAGGA CGTCACCGAA TCACGCAAAA TGCTGCGCCA GCTGAGCTAC
AGCGCCTCCC ATGATGCACT GACGCATCTC GCCAACCGCG CCAGTTTTGA GAAACAACTG
CGTATCCTGC TGCAAACGGT AAACAGTACA CATCAGCGAC ATGCCCTGGT GTTTATCGAT
CTTGATCGCT TTAAAGCGGT GAATGACAGC GCCGGGCATG CGGCGGGTGA CGCTTTACTG
CGCGAACTGG CGTCGTTGAT GCTGAGTATG CTGCGCTCCA GCGACGTGCT GGCGCGACTC
GGTGGTGATG AATTTGGTCT ACTGTTGCCA GACTGTAATA TCGAAAGTGC GCGTTTTATC
GCTACACGCA TTATCAGTGC CGTGAATGAT TATCACTTTA TATGGGAAGG ACGTGTACAT
CGGGTAGGTG CCAGTGCCGG GATTACCTTG ATTGATGACA ACAATCATCA GGCGGCTGAA
GTGATGTCGC AGGCTGATAT CGCCTGTTAT GCCTCCAAAA ATGGTGGCCG GGGCCGGGTG
ACGATTTACG AACCGCAGCA AGCTGCCGCA CATAGCGAGC GGGCAGCGAT GTCGCTTGAT
GAACAGTGGC GGATGATTAA AGAGAATCAG TTGATGATGA TCGCCCACGG TGTCGCTTCG
CCACGGATCC CGGAAGCACG TAATTTGTGG CTGATTTCAC TTAAGCTCTG GAATTGCGAA
GGCGAGATTA TTGATGAACA AACATTTCGT CGTAGCTTCA GCGATCCGGC ACTTAGCCAT
GCTCTTGACC GACGGGTATT CCACGATTTT TTCCAGCAGG CCGCAAAAGC GGTTGCCAGT
AAAGGCATAA GCATCGCCCT CCCCCTTTCC GTTGCCGGTT TGAGTAGCGC CACGCTGGTG
AATGATCTGC TTGAGCAGCT GGAAAACAGC CCTCTACCAC CACGGTTATT ACATCTGATT
ATTCCGGCTG AAGCGATTTT AGAGCACGCA GAAAGCGTGC AAAAACTGCG GCTGGCGGGA
TGTCGGATAG TGCTCAACCA GGTGGGCCGC GATCTGCAAA TCTTCAACTC GCTGAAAGCG
AATATGGCAG ATTACCTGCT ACTTGATGGT GAGTTATGCG CCAACGTGCA GGGTAATTTG
ATGGATGAGA TGCTGATTAC GATTATTCAG GGGCACGCTC AGCGACTCGG GATGAAAACC
ATCGCCGGGC CAGTCGTTTT ACCCTTAGTG ATGGATACGC TTTCTGGCAT CGGCGTCGAT
CTGATTTATG GTGATGTGAT TGCCGATGCC CAACCGCTGG ATTTGCTGGT GAATAGTAGT
TATTTCGCGA TTAACTGA
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| Protein sequence | MSKQSQHVLI ALPHPLLHLV SLGLVSFIFT LFSLELSQFG TQLAPLWFPT SIMMVAFYRH
AGRMWPGIAL SCSLGNIAAS ILLFSTSSLN MTWTTINIVE AVVGAVLLRK LLPWYNPLQN
LADWLRLALG SAIVPPLLGG GLVVLLTAGD DPLRAFLIWV LSESIGALAL VPLGLLFKPH
YLLRHRNPRL LFESLLTLAI TLTLSWLSML YLPWPFTFII VLLMWSAVRL PRMEAFLIFL
TTVMMVSLMM AADPSLLATP RTYLMSHMPW LPFLLILLPA NIMTMVMYAF RAERKHISES
ETRFRNAMEY SAIGMALVGT EGQWLQTNKA LCQFLGYSQE ELRGLTFQQL TWPEDLNKDL
QQVEKLISGE INTYSMEKRY YNRNGDVVWA LLAVSLVRHT DGTPLYFIAQ IEDINELKRT
EQVNQQLMER ITLANEAGGI GIWEWELKPN IFSWDKRMFE LYEIPPHIKP NWQVWYECVL
PEDRQHAEKV IRDSLQSRSP FKLEFRITVK DGIRHIRALA NRVLNKEGEV ERLLGINMDM
TEVKQLNEAL FQEKERLHIT LDSIGEAVVC IDMAMKITFM NPVAEKMSGW TQEEALGVPL
LTVLHITFGD NGPLMENIYS ADTSRSAIEQ DVVLHCRSGG SYDVHYSITP LSTLDGSNIG
SVLVIQDVTE SRKMLRQLSY SASHDALTHL ANRASFEKQL RILLQTVNST HQRHALVFID
LDRFKAVNDS AGHAAGDALL RELASLMLSM LRSSDVLARL GGDEFGLLLP DCNIESARFI
ATRIISAVND YHFIWEGRVH RVGASAGITL IDDNNHQAAE VMSQADIACY ASKNGGRGRV
TIYEPQQAAA HSERAAMSLD EQWRMIKENQ LMMIAHGVAS PRIPEARNLW LISLKLWNCE
GEIIDEQTFR RSFSDPALSH ALDRRVFHDF FQQAAKAVAS KGISIALPLS VAGLSSATLV
NDLLEQLENS PLPPRLLHLI IPAEAILEHA ESVQKLRLAG CRIVLNQVGR DLQIFNSLKA
NMADYLLLDG ELCANVQGNL MDEMLITIIQ GHAQRLGMKT IAGPVVLPLV MDTLSGIGVD
LIYGDVIADA QPLDLLVNSS YFAIN
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