| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SbBS512_E0979 |
|---|
| Symbol | |
|---|
| ID | 6271978 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shigella boydii CDC 3083-94 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010658 |
|---|
| Strand | - |
|---|
| Start bp | 902152 |
|---|
| End bp | 903414 |
|---|
| Gene Length | 1263 bp |
|---|
| Protein Length | 420 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 641725129 |
|---|
| Product | site-specific recombinase, phage integrase family protein |
|---|
| Protein accession | YP_001879655 |
|---|
| Protein GI | 187730111 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0582] Integrase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.00000000000444866 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTTTTAA ACGATTCTAA AATCCGCAAG TTAAAACCTT CTTCCCGTCC GGTAAAACTC
TCCGACGCTC ACGGTCTGTA TCTGCTCGTC AATCCGGGCG GTTCACGCAT CTGGTATCTC
AAATATCGTT TCAACGGAAA AGAATCCAGA GTCAGTCTTG GCGCATACCC GCTGGTCTCA
CTGGCAGAAG CCAGGCAACA GCGCGACGGT ATCCGCAAGC TACTGGCGCA GAATATCAAC
CCGGCGCAAC AGCGCATGGC AGAGAAATCC GCCTGCTCCC CTGAAAAGTG TTTTAAGGCG
GTGGCGCTGG CCTGGCACAA AACCAACAAA AAATGGTCGG CTGATTATGC CGCCCGTATT
CTCGCCAGTA TGGAAAACCA TATCTTCCCG GCGGTTGGTC ACCTGCCCGT TGCTGCGCTT
AAAACGCAGG ATTTCACGGC TTTGTTGCGG GTTATCGAGA ATAAAGGCTT TCTGGAAGTC
GCGTCCCGAA CCCGGCAGCA ACTCAGCAAC ATCATGCGCT ATGCCGTTCA GCAGGGACTT
ACCGACAGTA ATCCGGCGCA GCATCTGGAA GGTGTAACTG CCTCCCCCGT CAAGAATCAC
TATCCCGCTT TACCGCTGGA GCGATTGCCT GAACTGCTTG ACCGCATTGG CGACTACCGG
CAGGGCCGGG AGTTAACCCG GCTGGCGGTG GTGCTGACGT TGCACCTGTT CATCCGTTCC
AGCGAACTGC GTTTCGCCCG CTGGAGTGAG ATTGATTTCA GGCACAAAAT CTGGACCATC
CCCGCAACCC GCGAGGCCAT TGATAAAGTA CGGTTTTCGG GGCGTGGCGC AAAAATACGC
ACCCCGCATA TCGTACCGCT CTCCTGCCAG GCGATTGCCA TTCTGAAACA GATACAGGAG
CTTTCCGGCC ATCTGGATCT GGTGTTTCCC GGCGACCATA ATCCGTACAA GCCAATGAGC
GAAAACACCA CCAACCGGGC GCTGCGTCTG ATGGGGTATG ATACGAAAAC TGAAATCTGC
GGGCATGGAC TCAGGGCAAT GGCCTGTAGC GCCCTGGTGG AGTCGGATCT GTGGTCACGC
GATACAGTGG AGCGGCAAAT GAGCCACCAG GAGCGCAACA GCGTGCGTGC GGCATATGTG
CATAAGGCGG AGCATCTGGA GGCCCGAAAG GCCATGATGC AGTGGTGGTC GGATTATCTG
GATGTGTGCC GCGAGGGGTA TGTCGCGCCG TACATTTATG CGCGGCAGCA TGAGGCAGCC
TGA
|
|---|
| Protein sequence | MFLNDSKIRK LKPSSRPVKL SDAHGLYLLV NPGGSRIWYL KYRFNGKESR VSLGAYPLVS
LAEARQQRDG IRKLLAQNIN PAQQRMAEKS ACSPEKCFKA VALAWHKTNK KWSADYAARI
LASMENHIFP AVGHLPVAAL KTQDFTALLR VIENKGFLEV ASRTRQQLSN IMRYAVQQGL
TDSNPAQHLE GVTASPVKNH YPALPLERLP ELLDRIGDYR QGRELTRLAV VLTLHLFIRS
SELRFARWSE IDFRHKIWTI PATREAIDKV RFSGRGAKIR TPHIVPLSCQ AIAILKQIQE
LSGHLDLVFP GDHNPYKPMS ENTTNRALRL MGYDTKTEIC GHGLRAMACS ALVESDLWSR
DTVERQMSHQ ERNSVRAAYV HKAEHLEARK AMMQWWSDYL DVCREGYVAP YIYARQHEAA
|
|---|
| |