Gene SbBS512_E0764 details

Gene Information

• Locus tag: SbBS512_E0764
• ID: 6269888
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shigella boydii CDC 3083-94
• Kingdom: Bacteria
• Replicon accession: NC_010658
• Strand: -
• Start bp: 716468
• End bp: 718471
• Gene Length: 2004 bp
• Protein Length: 667 aa
• Translation table: 11
• GC content: 50%
• IMG OID: 641724948
• Product: transporter, BCCT family
• Protein accession: YP_001879476
• Protein GI: 187733500
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG1292] Choline-glycine betaine transporter
• TIGRFAM ID: [TIGR00842] choline/carnitine/betaine transport

Plasmid Coverage information

• Num covering plasmid clones: 27
• Plasmid unclonability p-value: 0.846408
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATTATGA GTGAAAATGA TACAATCCCA AAGAAGTCTA CAAGTCAGAT TAACAAAGCG 
GTATTCTTTA CATCTGCTTT GCTAATTTTC CTTCTTGTCG CCTTTGCCGC CGTATTCCCG 
GATGTCGCCG ACAAAAATTT TAAACTACTT CAGCAACAAA TCTTCACGAA TGCCAGCTGG 
TTCTACATCC TTGCTGTGGC CCTGATTTTA CTGAGTGTCA CGTTCCTTGG ACTCTCACGC 
TACGGTGATA TCAAGCTGGG CCCGGACCAT GCGCAGCCTG ATTTCAGCTA CCACTCCTGG 
TTTGCGATGC TTTTTTCGGC AGGGATGGGG ATCGGCCTGA TGTTCTTTGG CGTTGCCGAA 
CCTGTAATGC ATTATCTTTC GCCACCCGTT GGCACTCCAG AAACCGTTGC GGCAGCCAAG 
GAAGCAATGC GTCTGACCTT TTTCCACTGG GGACTGCACG CATGGGCAAT TTATGCCATT 
GTGGCGCTGA TTCTGGCGTT CTTCAGTTAC CGTCACGGTC TGCCTTTAAC TCTGCGCTCC 
GCACTCTATC CCATTATTGG CGATCGCATA TACGGACCTG TAGGACATGC GGTTGATATT 
TTCGCTGTTA TAGGCACGGT CTTTGGCGTT GCGACATCAC TGGGTTACGG TGTTTTGCAG 
GTGAATGCCG GTTTGAACCA TCTTTTCGGG GTGCCCATCA ATGAAACGGT GCAGGTAATT 
CTGATCGTGG TCATCACGGG GTTAGCGACG ATTTCAGTGG TGTCCGGTCT GGATAAGGGA 
ATACGTATCC TGTCTGAACT CAATCTGGGT CTGGCTTTGT TGCTCCTGGC GCTGGTCCTG 
TGTCTGGGAC CAACCGTGCT TCTGCTGAAG TCATTTGTGG AAAATACGGG CGGTTATCTT 
TCGGAACTGG TGAGTAAAAC GTTCAACCTT TACGCGTATG AGCCCAAGTC GAGCAACTGG 
CTGGGGGGCT GGACATTACT GTACTGGGGA TGGTGGCTTT CATGGTCGCC GTTTGTGGGG 
ATGTTCATCG CACGGGTCTC CCGCGGGCGA ACCATTCGCG AGTTTGTCAC CGGCGTGCTG 
TTTGTTCCCG CGGGTTTTAC GCTAATGTGG ATGACGGTGT TTGGTAACAG CGCGATCTAT 
CTCATTATGA ACCAGGGGGC CACAGACCTC GCCAATACTG TTCAGCAGGA TGTAGCGCTG 
GCCCTGTTTA ATTTCCTGGA GCATTTCCCG TTCTCTTCCG TGCTGTCATT CATTGCAATG 
GCGATGGTCA TCGTCTTCTT TGTAACGTCT GCTGATTCGG GGGCAATGGT TGTGGATACT 
CTGGCATCAG GTGGAGTGGC AAACACACCC GTCTGGCAGC GAATATTCTG GGCCTCGCTC 
ATGGGCATTG TTGCAATTGC GCTTCTCCTT GCCGGAGGGC TAAGTGCGCT GCAAACGGTG 
ACAATAGCGA GTGCATTGCC CTTCTCAGTG ATCTTACTAA TATCCATATA CGGACTTTTA 
AAAGCTTTGC GCCGGGATTT GACCAAGCGT GAAAGCCTGA GCATGGCGAC AATTGCTCCT 
ACGGCTGCAC GTAACCCAAT TCCTTGGCAG AGAAGGTTAC GCAATATCGC GTATCTGCCG 
AAGCGATCTC TTGTGAAACG TTTTATGGTC GACGTCATCC AGCCCGCCAT GACGCTGGTT 
CAGGAGGAAC TGAACAAGCA GGGGACGATA AGCCACATTA GTGATGCAGT CGACGATCGT 
ATTCGTCTTG AAGTCGATTT GGGCAACGAG CTGAATTTTA TATATGAAGT GAGGCTTCGC 
GGGTATATCT CACCGACCTT CGCGCTCGCC GCAATGGATA ATGATGAGCA GCAGACTGAA 
CAACATCGAT ATTATCGCGC TGAGGTTTAT CTCAAAGAAG GCGGTCAAAA TTATGATGTG 
ATGGGCTGGA ACCAGGAACA GTTGATTAAT GACATACTGG ACCAGTACGA AAAACACCTG 
CACTTCCTGC ACCTGGTTCG TTAA 

 

Protein sequence

MIMSENDTIP KKSTSQINKA VFFTSALLIF LLVAFAAVFP DVADKNFKLL QQQIFTNASW 
FYILAVALIL LSVTFLGLSR YGDIKLGPDH AQPDFSYHSW FAMLFSAGMG IGLMFFGVAE 
PVMHYLSPPV GTPETVAAAK EAMRLTFFHW GLHAWAIYAI VALILAFFSY RHGLPLTLRS 
ALYPIIGDRI YGPVGHAVDI FAVIGTVFGV ATSLGYGVLQ VNAGLNHLFG VPINETVQVI 
LIVVITGLAT ISVVSGLDKG IRILSELNLG LALLLLALVL CLGPTVLLLK SFVENTGGYL 
SELVSKTFNL YAYEPKSSNW LGGWTLLYWG WWLSWSPFVG MFIARVSRGR TIREFVTGVL 
FVPAGFTLMW MTVFGNSAIY LIMNQGATDL ANTVQQDVAL ALFNFLEHFP FSSVLSFIAM 
AMVIVFFVTS ADSGAMVVDT LASGGVANTP VWQRIFWASL MGIVAIALLL AGGLSALQTV 
TIASALPFSV ILLISIYGLL KALRRDLTKR ESLSMATIAP TAARNPIPWQ RRLRNIAYLP 
KRSLVKRFMV DVIQPAMTLV QEELNKQGTI SHISDAVDDR IRLEVDLGNE LNFIYEVRLR 
GYISPTFALA AMDNDEQQTE QHRYYRAEVY LKEGGQNYDV MGWNQEQLIN DILDQYEKHL 
HFLHLVR