Gene SbBS512_E0725 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSbBS512_E0725 
SymbolapbE 
ID6269063 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShigella boydii CDC 3083-94 
KingdomBacteria 
Replicon accessionNC_010658 
Strand
Start bp685187 
End bp686242 
Gene Length1056 bp 
Protein Length351 aa 
Translation table11 
GC content53% 
IMG OID641724911 
Productthiamine biosynthesis lipoprotein ApbE 
Protein accessionYP_001879439 
Protein GI187730105 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG1477] Membrane-associated lipoprotein involved in thiamine biosynthesis 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value0.0827027 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAAATAA GCTTTACCCG CGTGGCACTG CTGGCTGCCG CGCTCTTCTT TGTTGGTTGC 
GATCAAAAAC CACAACCCGC CAAAACCCAC GCTACTGAAG TTACCGTTCT TGAAGGCAAA
ACCATGGGTA CCTTCTGGCG TGCCAGCATC CCGGGCATTG ATGCCAAACG CAGTGCCGAA
CTTAAAGAAA AGATTCAGAC CCAGCTGGAC GCCGACGATC AGCTGCTTTC GACCTATAAA
AAAGATTCCG CGCTGATGCG CTTTAACGAC TCGCAAAGTT TGTCGCCGTG GCCAGTAAGT
GAAGCGATGG CCGAAATCGT CACTACCTCG CTGCGCATTG GCGCGAAGAC CGATGGTGCG
ATGGATATTA CCGTCGGGCC GCTGGTAAAT CTGTGGGGCT TTGGCCCGGA ACAACAGCCG
GTTCAAATTC CGAGCCAGGA ACAGATCGAC GAGATGAAAG CCAAAACTGG TTTACAGCAC
CTTACGGTCA TTAATCAGTC GCATCAGCAA TATCTGCAAA AAGACCTGCC GGATTTATAT
GTCGATCTCT CTACCGTCGG CGAAGGTTAT GCGGCGGATC ACTTGGCACG CTTGATGGAG
CAGGAAGGGA TTTCCCGCTA TCTGGTGTCG GTGGGCGGCG CGCTGAACAG CCGTGGTATG
AACGGTGAAG GCCTGCCGTG GCGGGTAGCG ATTCAAAAAC CAACCGATAA AGAAAACGCA
GTTCAGGCTG TGGTGGATAT CAACGGTCAT GGGATTAGCA CCTCTGGCAG CTACCGTAAC
TATTACGAAC TGGACGGCAA ACGTCTTTCT CATGTTATCG ATCCGCAAAC CGGGCGTCCC
ATCGAACACA ATCTGGTATC CGTGACGGTG ATTGCTCCGA CGGCGCTGGA AGCCGATGCC
TGGGATACTG GCTTGATGGT ACTCGGGCCG GAGAAAGCCA AAGAGGTTGT TCGCCGGGAA
GGGCTGGCGG TTTATATGAT CACCAAAGAA GGCGATAGCT TTAAAACCTG GATGTCACCA
CAGTTTAAAA GCTTCCTTGT CAGCGAAAAA AATTAA
 
Protein sequence
MEISFTRVAL LAAALFFVGC DQKPQPAKTH ATEVTVLEGK TMGTFWRASI PGIDAKRSAE 
LKEKIQTQLD ADDQLLSTYK KDSALMRFND SQSLSPWPVS EAMAEIVTTS LRIGAKTDGA
MDITVGPLVN LWGFGPEQQP VQIPSQEQID EMKAKTGLQH LTVINQSHQQ YLQKDLPDLY
VDLSTVGEGY AADHLARLME QEGISRYLVS VGGALNSRGM NGEGLPWRVA IQKPTDKENA
VQAVVDINGH GISTSGSYRN YYELDGKRLS HVIDPQTGRP IEHNLVSVTV IAPTALEADA
WDTGLMVLGP EKAKEVVRRE GLAVYMITKE GDSFKTWMSP QFKSFLVSEK N