| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SbBS512_E0724 |
|---|
| Symbol | ompC |
|---|
| ID | 6270232 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shigella boydii CDC 3083-94 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010658 |
|---|
| Strand | + |
|---|
| Start bp | 683945 |
|---|
| End bp | 685075 |
|---|
| Gene Length | 1131 bp |
|---|
| Protein Length | 376 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 641724910 |
|---|
| Product | outer membrane porin protein C |
|---|
| Protein accession | YP_001879438 |
|---|
| Protein GI | 187733369 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3203] Outer membrane protein (porin) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.140015 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGTTA AAGTACTGTC CCTCCTGGTC CCAGCTCTGC TGGTAGCAGG CGCAGCAAAC
GCTGCTGAAG TTTACAACAA AGACGGCAAC AAATTAGATC TGTACGGTAA AGTAGACGGC
CTGCACTATT TCTCTGACAA CAAGTCAGAA GACGGCGACC AGACCTATGT ACGTCTTGGT
TTCAAAGGCG AAACTCAGGT TACTGACCAG CTGACCGGTT ACGGCCAGTG GGAATATCAG
ATCCAGGGCA ATACCTCTGA AGACAACAAA GAAAACTCCT GGACCCGTGT GGCATTCGCA
GGTCTGAAAT TCCAGGATGT AGGTTCTTTC GACTACGGTC GTAACTACGG CGTTGTTTAC
GACGTAACTT CCTGGACCGA CGTACTGCCA GAATTCGGTG GCGACACCTA CGGTTCTGAC
AACTTCATGC AGCAGCGTGG TAACGGCTTC GCGACCTACC GTAACACCGA CTTCTTCGGT
CTGGTTGACG GTCTGAACTT TGCTGTTCAG TACCAGGGCA AAAACGGTAG CGTAAGCGGC
GAAGGCATGA CCAACAACGG TCGTGGCGCT CTGCGTCAGA ACGGCGACGG TGTCGGCGGT
TCTATCACTT ATGATTACGA AGGCTTCGGT ATCGGTGCTG CAGTTTCCAG CTCCAAACGT
ACTGATGATC AAAATGGTAG CTACATCAGC AATGGTGTAG TTCGTAACTA CATCGGTACT
GGCGACCGTG CTGAAACCTA CACTGGTGGT CTGAAATACG ACGCTAACAA CATCTACTTG
GCTGCTCAGT ACACCCAGAC CTACAACGCA ACTCGCGTAG GTTCCCTGGG TTGGGCGAAC
AAAGCACAGA ACTTCGAAGC TGTTGCTCAG TACCAGTTCG ACTTCGGTCT GCGTCCGTCT
GTAGCATACC TGCAGTCTAA AGGTAAAAAC CTGGGTGTCA TCAATGGTCG TAACTACGAC
GACGAAGATA TCCTGAAATA TGTTGATGTT GGCGCGACCT ACTACTTCAA CAAAAACATG
TCCACCTATG TTGACTACAA AATCAACCTG CTGGACGACA ACCAGTTCAC TCGTGACGCT
GGCATCAACA CTGATAACAT CGTAGCTCTG GGTCTGGTTT ACCAGTTCTA A
|
|---|
| Protein sequence | MKVKVLSLLV PALLVAGAAN AAEVYNKDGN KLDLYGKVDG LHYFSDNKSE DGDQTYVRLG
FKGETQVTDQ LTGYGQWEYQ IQGNTSEDNK ENSWTRVAFA GLKFQDVGSF DYGRNYGVVY
DVTSWTDVLP EFGGDTYGSD NFMQQRGNGF ATYRNTDFFG LVDGLNFAVQ YQGKNGSVSG
EGMTNNGRGA LRQNGDGVGG SITYDYEGFG IGAAVSSSKR TDDQNGSYIS NGVVRNYIGT
GDRAETYTGG LKYDANNIYL AAQYTQTYNA TRVGSLGWAN KAQNFEAVAQ YQFDFGLRPS
VAYLQSKGKN LGVINGRNYD DEDILKYVDV GATYYFNKNM STYVDYKINL LDDNQFTRDA
GINTDNIVAL GLVYQF
|
|---|
| |