Gene SbBS512_E0662 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSbBS512_E0662 
SymboltolB 
ID6273209 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShigella boydii CDC 3083-94 
KingdomBacteria 
Replicon accessionNC_010658 
Strand
Start bp632517 
End bp633809 
Gene Length1293 bp 
Protein Length430 aa 
Translation table11 
GC content53% 
IMG OID641724858 
Producttranslocation protein TolB 
Protein accessionYP_001879397 
Protein GI187733089 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0823] Periplasmic component of the Tol biopolymer transport system 
TIGRFAM ID[TIGR02800] tol-pal system beta propeller repeat protein TolB 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value6.73794e-12 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGCAGG CATTACGAGT AGCATTTGGT TTTCTCATAC TGTGGGCATC AGTTCTGCAT 
GCTGAAGTCC GCATTGTGAT CGACAGCGGT GTAGATTCCG GTCGTCCTAT TGGTGTTGTT
CCTTTCCAGT GGGCGGGGCC TGGTGCGGCA CCTGAAGATA TTGGCGGCAT CGTTGCTGCT
GACTTGCGTA ACAGCGGTAA ATTTAATCCG TTAGATCGCG CTCGTCTGCC ACAGCAGCCG
GGTAGTGCGC AGGAAGTACA ACCATCTGCA TGGTCCGCAC TGGGCATTGA CGCTGTAGTT
GTCGGTCAGG TCACTCCGAA TCCGGATGGT TCTTACAATG TTGCTTATCA ACTTGTTGAC
ACTGGCGGCG CACCGGGTAC TGTACTTGCT CAGAACTCGT ACAAAGTGAA CAAGCAGTGG
CTGCGTTATG CTGGTCATAC CGCCAGTGAT GAAGTGTTTG AAAAACTGAC CGGCATTAAA
GGTGCGTTCC GTACCCGTAT TGCCTACGTT GTTCAGACCA ACGGCGGTCA GTTCCCGTAT
GAACTGCGCG TATCTGACTA TGACGGTTAC AACCAGTTTG TCGTTCACCG TTCACCGCAG
CCGCTGATGT CTCCGGCGTG GTCACCAGAC GGTTCTAAAC TGGCTTATGT GACCTTCGAA
AGCGGTCGTT CCGCGCTGGT TATTCAGACG CTGGCAAATG GCGCTGTACG TCAGGTGGCT
TCATTCCCGC GTCACAACGG TGCACCTGCA TTCTCGCCAG ACGGCAGCAA ACTGGCATTC
GCCTTGTCGA AAACCGGTAG TCTGAACCTG TACGTAATGG ATTTGGCTTC TGGTCAGATC
CGCCAGGTGA CTGATGGTCG CAGTAACAAT ACCGAACCGA CCTGGTTCCC GGATAGCCAG
AACCTGGCAT TTACTTCTGA CCAGGCCGGT CGTCCGCAGG TTTATAAAGT GAATATCAAC
GGCGGTGCGC CACAACGTAT TACCTGGGAA GGTTCGCAGA ACCAGGATGC GGATGTCAGC
AGCGACGGTA AATTTATGGT AATGGTCAGC TCCAATGGTG GGCAGCAGCA CATTGCCAAA
CAAGATCTGG CAACGGGAGG CGTACAAGTT CTGTCGTCCA CGTTCCTGGA TGAAACGCCA
AGTCTGGCAC CTAATGGCAC TATGGTAATC TACAGCTCTT CTCAGGGGAT GGGATCCGTG
CTGAATTTGG TTTCTACAGA TGGGCGTTTC AAAGCGCGTC TTCCGGCAAC TGATGGACAG
GTCAAATTCC CTGCCTGGTC GCCGTATCTG TGA
 
Protein sequence
MKQALRVAFG FLILWASVLH AEVRIVIDSG VDSGRPIGVV PFQWAGPGAA PEDIGGIVAA 
DLRNSGKFNP LDRARLPQQP GSAQEVQPSA WSALGIDAVV VGQVTPNPDG SYNVAYQLVD
TGGAPGTVLA QNSYKVNKQW LRYAGHTASD EVFEKLTGIK GAFRTRIAYV VQTNGGQFPY
ELRVSDYDGY NQFVVHRSPQ PLMSPAWSPD GSKLAYVTFE SGRSALVIQT LANGAVRQVA
SFPRHNGAPA FSPDGSKLAF ALSKTGSLNL YVMDLASGQI RQVTDGRSNN TEPTWFPDSQ
NLAFTSDQAG RPQVYKVNIN GGAPQRITWE GSQNQDADVS SDGKFMVMVS SNGGQQHIAK
QDLATGGVQV LSSTFLDETP SLAPNGTMVI YSSSQGMGSV LNLVSTDGRF KARLPATDGQ
VKFPAWSPYL