| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SbBS512_E0569 |
|---|
| Symbol | |
|---|
| ID | 6270631 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shigella boydii CDC 3083-94 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010658 |
|---|
| Strand | - |
|---|
| Start bp | 544249 |
|---|
| End bp | 545655 |
|---|
| Gene Length | 1407 bp |
|---|
| Protein Length | 468 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 641724774 |
|---|
| Product | outer membrane porin, OprD family |
|---|
| Protein accession | YP_001879321 |
|---|
| Protein GI | 187732823 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0000403252 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGTACGT TTAGTGGCAA ACGTAGTACG CTGGCGCTGG CTATCGCCGG TGTTACAGCA
ATGTCGGGCT TTATGGCAAT GCCGGAGGCT CGCGCCGAAG GATTCATCGA CGATTCAACC
TTAACCGGCG GTATATATTA CTGGCAGCGT GAACGCGACC GTAAAGATGT TACCGACGGC
GACAAATACA AAACCAACCT TTCTCACTCC ACCTGGAATG CCAACCTCGA TTTTCAGTCC
GGTTATGCTG CTGATATGTT CGGCCTTGAT ATTGCTGTGT TTACGGCGAT TGAAATGGCG
GAAAACGGCG ACAGCTCCCA CCCGAACGAA ATCGCGTTTT CAAAAAGTAA TAAAGCCTAT
GACGAAGACT GGTCCGGCGA CAAAAGCGGT ATAAGCCTGT ATAAAGCTGC GGCCAAATTT
AAATACGGTC CGGTTTGGGC GAGGGCAGGT TACATTCAGC CAACTGGTCA AACGCTGTTA
GCGCCGCACT GGAGCTTTAT GCCAGGTACT TATCAGGGGG CGGAAGCCGG GGCGAATTTT
GATTACGGCG ATGCTGGTGC GTTGAGTTTC TCCTACATGT GGACCAACGA ATACAAAGCG
CCGTGGCATC TGGAAATGGA TGAGTTTTAT CAGAACGATA AAACCACCAA AGTTGATTAT
CTGCACTCCC TTGGGGCGAA ATACGACTTC AAAAATAACT TCGTACTGGA AGCGGCATTT
GGTCAGGCGG AAGGGTATAT CGATCAATAT TTTGCCAAAG CCAGCTACAA ATTTGATATC
GCCGGTAGCC CGTTAACCAC CAGCTACCAG TTCTATGGTA CGCGCGATAA AGTTGACGAT
CGCAGCGTCA ACGACCTTTA TGACGGCACC GCCTGGCTGC AAGCGTTGAC CTTTGGTTAC
CGGGCGGCTG ACGTAGTGGA TTTGCGCCTC GAAGGCACCT GGGTTAAGGC TGACGGTCAG
CAGGGATACT TCCTGCAACG TATGACTCCA ACCTACGCTT CCTCCAACGG CCGCCTGGAT
ATCTGGTGGG ATAACCGTTC CGACTTCAAC GCTAACGGCG AAAAAGCGGT CTTCTTCGGT
GCGATGTATG ACCTGAAAAA CTGGAATCTT CCAGGCTTCG CCATCGGCGC TTCCTACGTT
TACGCATGGG ATGCTAAACC TGCGACCTGG CAGAGCAATC CGGATGCGTA CTACGACAAA
AACCGGACTA TTGAAGAGTC TGCATACAGC CTGGATGCGG TCTACACCAT TCAGGACGGT
CGCGCCAAAG GCACGATGTT CAAACTGCAC TTCACCGAAT ACGACAACCA CTCCGACATC
CCAAGCTGGG GCGGTGGTTA CGGCAACATC TTCCAGGATG AGCGTGACGT GAAATTTATG
GTAATCGCAC CATTCACCAT CTTCTGA
|
|---|
| Protein sequence | MRTFSGKRST LALAIAGVTA MSGFMAMPEA RAEGFIDDST LTGGIYYWQR ERDRKDVTDG
DKYKTNLSHS TWNANLDFQS GYAADMFGLD IAVFTAIEMA ENGDSSHPNE IAFSKSNKAY
DEDWSGDKSG ISLYKAAAKF KYGPVWARAG YIQPTGQTLL APHWSFMPGT YQGAEAGANF
DYGDAGALSF SYMWTNEYKA PWHLEMDEFY QNDKTTKVDY LHSLGAKYDF KNNFVLEAAF
GQAEGYIDQY FAKASYKFDI AGSPLTTSYQ FYGTRDKVDD RSVNDLYDGT AWLQALTFGY
RAADVVDLRL EGTWVKADGQ QGYFLQRMTP TYASSNGRLD IWWDNRSDFN ANGEKAVFFG
AMYDLKNWNL PGFAIGASYV YAWDAKPATW QSNPDAYYDK NRTIEESAYS LDAVYTIQDG
RAKGTMFKLH FTEYDNHSDI PSWGGGYGNI FQDERDVKFM VIAPFTIF
|
|---|
| |