Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SbBS512_E0114 |
Symbol | speE |
ID | 6272609 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shigella boydii CDC 3083-94 |
Kingdom | Bacteria |
Replicon accession | NC_010658 |
Strand | - |
Start bp | 127222 |
End bp | 128088 |
Gene Length | 867 bp |
Protein Length | 288 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 641724370 |
Product | spermidine synthase |
Protein accession | YP_001878929 |
Protein GI | 187731639 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0421] Spermidine synthase |
TIGRFAM ID | [TIGR00417] spermidine synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.000000001847 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCCGAAA AAAAACAGTG GCATGAAACG CTACACGACC AGTTTGGGCA GTACTTTGCG GTAGATAACG TTCTGTATCA TGAAAAGACC GATCACCAAG ATCTGATCAT TTTTGAGAAC GCTGCATTTG GTCGCGTAAT GGCGCTGGAT GGCGTAGTAC AAACCACCGA GCGCGACGAG TTTATCTATC ATGAGATGAT GACCCATGTT CCGCTACTGG CCCACGGTCA CGCGAAACAT GTGCTGATTA TCGGCGGCGG CGACGGTGCC ATGCTGCGTG AAGTAACCCG ACATAAAAAC GTTGAGTCAA TCACGATGGT GGAAATCGAT GCGGGTGTCG TGTCGTTCTG CCGTCAGTAT CTGCCCAACC ATAACGCCGG TAGCTACGAC GATCCGCGCT TTAAGCTGGT GATCGACGAT GGCGTCAATT TCGTTAATCA AACCAGCCAG ACCTTTGATG TCATTATCTC CGACTGCACC GATCCTATCG GTCCCGGCGA AAGTCTGTTC ACCTCAGCAT TTTATGAAGG CTGCAAACGT TGCCTGAATC CTAGCGGTAT CTTCGTCGCA CAAAACGGCG TCTGCTTTTT ACAGCAGGAA GAAGCCATCG ACAGCCATCG CAAACTCAGC CATTACTTCA GCGACGTTGG CTTTTATCAG ACGGCGATCC CGACCTATTA CGGCGGTATC ATGACTTTTG CATGGGCGAC AGATAACGAC GCCTTACGCC ATCTCTCAAC CGAAATTATT CAGGCGCGTT TTCTCGCTTC TGGCCTGAAA TGCCGTTATT ACAATCCGGC AATCCATACG GCAGCTTTTG CCTTACCTCA GTATCTGCAA GATGCACTGG CTTCACAGCC GTCCTAA
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Protein sequence | MAEKKQWHET LHDQFGQYFA VDNVLYHEKT DHQDLIIFEN AAFGRVMALD GVVQTTERDE FIYHEMMTHV PLLAHGHAKH VLIIGGGDGA MLREVTRHKN VESITMVEID AGVVSFCRQY LPNHNAGSYD DPRFKLVIDD GVNFVNQTSQ TFDVIISDCT DPIGPGESLF TSAFYEGCKR CLNPSGIFVA QNGVCFLQQE EAIDSHRKLS HYFSDVGFYQ TAIPTYYGGI MTFAWATDND ALRHLSTEII QARFLASGLK CRYYNPAIHT AAFALPQYLQ DALASQPS
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