Gene SbBS512_E0060 details

Gene Information

• Locus tag: SbBS512_E0060
• Symbol: tbpA
• ID: 6272093
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shigella boydii CDC 3083-94
• Kingdom: Bacteria
• Replicon accession: NC_010658
• Strand: -
• Start bp: 65561
• End bp: 66544
• Gene Length: 984 bp
• Protein Length: 327 aa
• Translation table: 11
• GC content: 53%
• IMG OID: 641724319
• Product: thiamine transporter substrate binding subunit
• Protein accession: YP_001878879
• Protein GI: 187730746
• COG category: [H] Coenzyme transport and metabolism
• COG ID: [COG4143] ABC-type thiamine transport system, periplasmic component
• TIGRFAM ID: [TIGR01254] ABC transporter periplasmic binding protein, thiB subfamily; [TIGR01276] thiamine ABC transporter, periplasmic binding protein

Plasmid Coverage information

• Num covering plasmid clones: 42
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGTTAAAAA AATGTCTTCC CCTGCTGTTG CTGTGCACAG CGCCCGTTTT CGCTAAACCC 
GTTCTGACTG TTTATACCTA CGATTCCTTC GCCGCCGACT GGGGGCCTGG TCCAAAGATC 
AAAAAAGCTT TTGAAGCCGA CTGTAACTGC GAACTGAAAC TGGTGGCGCT GGAAGATGGC 
GTTTCGCTTC TCAACCGTCT ACGGATGGAA GGCAAAAATA GTAAAGCCGA TGTGGTGCTG 
GGGCTGGATA ACAATCTGTT AGACGCCGCC AGTAAAACCG GACTATTTGC CAAAAGCGGT 
GTGGCAGCGG ATGCCGTTAA CGTTCCCGGC GGCTGGAATA ATGACACTTT CGTCCCGTTT 
GATTACGGCT ATTTCGCCTT CGTCTATGAC AAGAACAAAC TGAAAAACCC GCCGCAAAGC 
CTGAAAGAAT TGGTTGAGAG CGATCAAAAC TGGCGGGTGA TTTATCAGGA TCCGCGCACC 
AGTACGCCGG GGCTGGGCCT GCTGTTGTGG ATGCAAAAAG TCTATGGCGA TGACGCCCCA 
CAAGCCTGGC AAAAACTGGC GAAGAAAACC GTCACGGTCA CCAAAGGCTG GAGCGAAGCC 
TACGGCCTGT TTTTAAAAGG TGAAAGCGAT CTGGTACTGA GTTACACCAC CTCTCCGGCT 
TATCACATTC TCGAAGAGAA AAAAGATAAC TACGCCGCCG CGAACTTTAG CGAAGGTCAC 
TATCTGCAGG TGGAAGTCGC CGCCCGCACC GCTGCCAGCA AGCAGCCGGA GCTGGCGCAA 
AAATTCCTCC AGTTTATGGT TTCTCCGGCT TTTCAGAATG CGATCCCAAC CGGTAACTGG 
ATGTATCCGG TGGCAAATGT CACGCTGCCT GCCGGGTTTG AACAATTGAC CAAACCGGCC 
ACCACGCTGG AGTTCACACC AGCTGAAGTG GCGGCACAAC GTCAGGCATG GATTAGCGGA 
TGGCAACGCG CCGTCAGCCG TTAA 

 

Protein sequence

MLKKCLPLLL LCTAPVFAKP VLTVYTYDSF AADWGPGPKI KKAFEADCNC ELKLVALEDG 
VSLLNRLRME GKNSKADVVL GLDNNLLDAA SKTGLFAKSG VAADAVNVPG GWNNDTFVPF 
DYGYFAFVYD KNKLKNPPQS LKELVESDQN WRVIYQDPRT STPGLGLLLW MQKVYGDDAP 
QAWQKLAKKT VTVTKGWSEA YGLFLKGESD LVLSYTTSPA YHILEEKKDN YAAANFSEGH 
YLQVEVAART AASKQPELAQ KFLQFMVSPA FQNAIPTGNW MYPVANVTLP AGFEQLTKPA 
TTLEFTPAEV AAQRQAWISG WQRAVSR