Gene SbBS512_E0050 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSbBS512_E0050 
Symbol 
ID6270386 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShigella boydii CDC 3083-94 
KingdomBacteria 
Replicon accessionNC_010658 
Strand
Start bp50837 
End bp51496 
Gene Length660 bp 
Protein Length219 aa 
Translation table11 
GC content54% 
IMG OID641724309 
Product23S rRNA/tRNA pseudouridine synthase A 
Protein accessionYP_001878869 
Protein GI187731746 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0564] Pseudouridylate synthases, 23S RNA-specific 
TIGRFAM ID[TIGR00005] pseudouridine synthase, RluA family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value4.37271e-11 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGGGATGG AAAACTACAA TCCACCGCAG GAACCCTGGT TGGTTATCCT GTATCAGGAT 
GACCACATTA TGGTGGTTAA CAAGCCGAGC GGTTTGTTGT CTGTGCCGGG GCGTCTGGAA
GAGCACAAAG ACAGCGTGAT GACGCGCATT CAGCGTGATT ATCCGCAGGC AGAATCGGTG
CATCGTCTGG ATATGGCTAC CAGCGGCGTG ATTGTAGTGG CGCTGACCAA AGCCGCGGAG
CGGGAGTTAA AACGCCAGTT CCGCGAGCGC GAGCCGAAAA AGCAGTATGT GGCCCGCGTC
TGGGGGCATC CATTCCCTGC GGAAGGTCTG GTGGATCTGC CGCTGATTTG CGACTGGCCA
AACCGCCCGA AACAGAAAGT CTGTTACGAA ACGGGTAAAC CTGCGCAGAC GGAATATGAA
GTGGTGGAGT ATGCGGCGGA TAACACGGCA AGAGTGGTGT TAAAACCGAT TACTGGGCGT
TCGCATCAAT TGCGTGTGCA TATGCTGGCG CTGGGGCATC CGATTCTCGG CGATCGTTTT
TATGCATCAC CAGAAGCGAG AGCGATGGCA CCGCGTTTGT TGCTACATGC AGAGATGTTG
ACGATTACCC ATCCGGCGTA TGGCAATAGT ATGACGTTTA AAGCGCCAGC GGATTTTTAA
 
Protein sequence
MGMENYNPPQ EPWLVILYQD DHIMVVNKPS GLLSVPGRLE EHKDSVMTRI QRDYPQAESV 
HRLDMATSGV IVVALTKAAE RELKRQFRER EPKKQYVARV WGHPFPAEGL VDLPLICDWP
NRPKQKVCYE TGKPAQTEYE VVEYAADNTA RVVLKPITGR SHQLRVHMLA LGHPILGDRF
YASPEARAMA PRLLLHAEML TITHPAYGNS MTFKAPADF