| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SbBS512_0047 |
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| Symbol | |
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| ID | 6268359 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shigella boydii CDC 3083-94 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010657 |
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| Strand | + |
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| Start bp | 28637 |
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| End bp | 30499 |
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| Gene Length | 1863 bp |
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| Protein Length | 620 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 641724255 |
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| Product | TraG/TraD family protein |
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| Protein accession | YP_001878815 |
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| Protein GI | 187729997 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 157 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAAAACTT TTAATAAGTC GCAATCTGTT TTTATATTCG CTGTTATGCT TGTTGCGGCA
TGGTTTGCAG GTTCATTTAT TTTCTTTGTG CTTTACTTCA GCCAGATAAA GAATCTGAAA
CCATTGAAGG CTGTGTTCAG ATCCATTGAT GCGTACAGGA TGGATATTTT TACAGACAGC
CTTACTTTAT CTGTTGTGAC TACGGATATC AGAGTTTTAG CCTTTGTTGC ACTTGGAGCA
GGATTTGTCG TGTCTCTTAT CATCCCTGTT GCGGCGTTGA TAAAACTGAA CGAGAAGAAA
GAAAATATTT TCGGTGATGC GCGATTTGCA ACAATTAATG ATATTCGTGA GTCTAACAGT
TTCACGCTTG ACGGTGACGA AAAAGACGGG ATTATCGTTG GTATAAAAGA CAAGAAAATA
ATACGCTATG TGGGAGCAGC ATTCAGTGCT ATGGGAGCCG GAACAAGGGC TGGTAAAGGT
GCTGGTATAG TCATCACTAA TCTTATGAAG TACTGGTGGA GTGTTATTAT TCTCGATCCA
AAAAGGGAGT GTTTTAATAT CACCAGTCTT ATCAGGAAGG TGATTTTAGG TCATGAGGTT
TATAAATTTG ATCCCTTTAG TCCGGTAACG CACCGCTTTA ACCCTTTGTA TTATGTCAGC
ATGGGAACGA GTGAAGGTTT TAACCAGCTT GAAAATCTTT CGTTGATTAT TTACCCCTAT
AAGACAGATG GTGCGGATGC TGGTAGCTAT CTTAATAAGA CGGCGGGTGG TGTTTTTAAA
TCTTATGCTG TCGCTTTATG GTTTATGATT AAGAATGATA AGGCTGGACT AAAAACGCTT
GATATTGAGC CTGTCTTCTC AATGTCTAAA ATTAATCAGC TTTTTGAGCG TGCAGAACCC
GAACATCTTC TTTCATTCAT GAATGATATT CGTTCAGAAT TAAGGGGGAA AGACAAAACG
CTTGCTGATA TTGGTGTCGC TGGCCTTAAG GCATTCATTG AGATGGAGGA TAAAACAAAA
GCACAACTCA AAAGCAACTT TCTTAATGGA TTATCACCGT TTGCTAACCC CAATGTGGCG
AATGCTACTG ATGGAAATGA TTTTGATTTG CGGCAGGTGC GGAAAAAACG GATGACAATT
TATTTCTGTA TTTCTGGTGA TAATGCCAGG TTGGCTGAAA AAATAACAAA TATTTTCTTT
CAGCTTGGTA TACAGGTGAA TCTTGAAAAG ATGCCAACGG ATGATCCGGA AATAAAGCAT
GACTGCCTTT TTCTACTGGA TGAATTCCCG TCAATTGGTG CTGTAGATTA CATCAAGAGT
AAATCTGGTC TTATTGCTGG TTACAAGCTG AAATTGTTGA TTGTTTACCA GGTCGGCTCT
CAGCTTGAGG AAATCTACAG TTATGCAGGC AGTAAAACAT TACTGGCAAG TGCACCCTGC
AAAATCGTTT ATTCTGCTTC TGATGTTAAA GATGCACGGG AGTTATCAGA GGCGATGGGA
ACACGAACAG TAACTATCGG TTCGAAAAGC AAAAGTCGTA GTCGTGGAGG AACATCGAGA
TCTGAATCAG AAAACCTTAT TGAGCGTCCA CTGGTAACAA CAAATGAACT ACTGACACTG
AAATTTAGTG AAGAAATCCT GGCAATGAAG GGAGAAAACC CGATTCGTTG TGAAAAGGCA
TTCTACTATC TCCATGAGTA TTTCTTTGGT GATTTTGTGA AGGTTGCTCC GGAACTTGCA
AATATTTTCC CCAGGAAGAA AGGAAAGCTG GTTATGCCTC CACAGAAAGT ATTTGAAAAT
GAAATCGTCG CAAAAGGGTA TCTGGCAGTA AAAGATGTTC CTGATCTCGA TAAAGCGGCA
TAA
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| Protein sequence | MKTFNKSQSV FIFAVMLVAA WFAGSFIFFV LYFSQIKNLK PLKAVFRSID AYRMDIFTDS
LTLSVVTTDI RVLAFVALGA GFVVSLIIPV AALIKLNEKK ENIFGDARFA TINDIRESNS
FTLDGDEKDG IIVGIKDKKI IRYVGAAFSA MGAGTRAGKG AGIVITNLMK YWWSVIILDP
KRECFNITSL IRKVILGHEV YKFDPFSPVT HRFNPLYYVS MGTSEGFNQL ENLSLIIYPY
KTDGADAGSY LNKTAGGVFK SYAVALWFMI KNDKAGLKTL DIEPVFSMSK INQLFERAEP
EHLLSFMNDI RSELRGKDKT LADIGVAGLK AFIEMEDKTK AQLKSNFLNG LSPFANPNVA
NATDGNDFDL RQVRKKRMTI YFCISGDNAR LAEKITNIFF QLGIQVNLEK MPTDDPEIKH
DCLFLLDEFP SIGAVDYIKS KSGLIAGYKL KLLIVYQVGS QLEEIYSYAG SKTLLASAPC
KIVYSASDVK DARELSEAMG TRTVTIGSKS KSRSRGGTSR SESENLIERP LVTTNELLTL
KFSEEILAMK GENPIRCEKA FYYLHEYFFG DFVKVAPELA NIFPRKKGKL VMPPQKVFEN
EIVAKGYLAV KDVPDLDKAA
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