Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Amuc_2030 |
Symbol | |
ID | 6275502 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Akkermansia muciniphila ATCC BAA-835 |
Kingdom | Bacteria |
Replicon accession | NC_010655 |
Strand | + |
Start bp | 2463586 |
End bp | 2466693 |
Gene Length | 3108 bp |
Protein Length | 1035 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 642614091 |
Product | transporter, hydrophobe/amphiphile efflux-1 (HAE1) family |
Protein accession | YP_001878621 |
Protein GI | 187736509 |
COG category | [V] Defense mechanisms |
COG ID | [COG0841] Cation/multidrug efflux pump |
TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.0107983 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 0.000143133 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGATTGCGG ACCTGTTTAT CAAACGCCCC AAATTCGCCA TCGTCATCGC CATCCTGATG ATGCTGGCTG GCGGCATCTG CCTGAACCAG CTCCCCATTG CGGAGTATCC GGAAATCGCG CCCACCAGCA TCAACGTGCA GGCCACCTAT ACGGGTGCCA GCGCCCAGGT AGTGATGGAA ACGCTGGCCT CCCCCATTGA GGAAGAACTC AACGGGTTGG AAAACCTGCT CTATTTCTCC TCCAAGTCAG ATAACACCGG CGGGTATTCC CTGTCCCTGA CGTTCAAGAG CGGCACGAAT TCGGACATCA ACATGGTGAA CGTTCAGAAC GCCTTGAAAC GGGTGGAATA CAAACTTCCC AAGGAGGTGA CGGACCAGGG CATCAAGATC AAGAAACGCT CCTCTGACAT CCTGGGATTC TTCGCTTTCC GGTCCACCAG CATGAGTTCC CTGGAGCTGA ACAACTTCGT CAAGACCAGG GTGAAGGATG AGGTTGCCCG CGTACCGGGA ATCTCTGCCG TCAACCTGAT GCCGGAAAAG AATTACAGCA TGCGCATCTG GCTGGACGCC CTGCGCATGT CCGCCCTGAA TATCACGCCG GATGACGTTT CCAATGCCAT CAAGGCGCAG AACGTTCAGG CCGCGGCCGG CTCCATCGGC TCGGAAGGGG AAAACAACTT CATCCAATAC AAGGTGAACG TCACCGGACG ACTGCAGACC GTGGAGGAAT TCAGCAAGAT TATCGTCCGC ACGGGCCAGG ATGGCCACGT TACCCGGCTG GACGACATTG CCCGCATTGA GCTGGGCGCG GAAACCTACA CGGGCAGCAG CCGCAACAAC GGGGAAGACT CCGTGAACAT GGCTGTGTAC CGCCTGGATG ACGCCAATGC CCTGGAAGCC ATGAACGGCG TGAAAGACAC GCTGGAGAAG CTGGAAAAAC GTTTTCCGGA AGGTGTGAGC TACGTCGTGA GCTACGACCC CACGCAATAC ATTTCCGCCA CCATGGCGGA AATCGTGGAA ACGCTTGTCA TCGCCCTGAT TCTGGTGGTG GGCATCACGT ACCTGTTCCT GCAGGACTGG CGTGCCACGC TCATTCCGGC GCTCGCCATT CCCGTCTCCC TGATAGGCAC CTTCGCCATC CTGCTGCCCC TGGGCTTTTC CATCAATGTG CTGACCATGT TCGGCCTTAT TCTAGTAATC GGGTCCCTGG TGGACGACGG CATCATCGTA GTGGAAAATA CGATGCGCAT TCTGGAGACG GAGGATCTCT CGCCGGAAGA AGCCACCAGG AAGAGCATGC ACCAGATTAC AGGCGCCATC ATCGCCACCA CGCTGGTGAC GGTCGCCATT TACGTGCCCA TCGCCTTCTT CGGCGGCATG GTAGGGAACA TTTACATGCA ATTCTCCGTA ACCATGTGCG TGGCCCTCTG CCTTTCCGCC ATCAATTCCC TGACGCTCAG CCCCGCGCTG TGCGTTCTGC TGCTGAAAAG GAAGCAAAAG AAACAGAGCA GGTTCAGCCT CTTCCGCCCC TTCAATGTCT CTCTGGAATG GGCGCGCAAA AGCTATATCA AATGCGCCGG CATCATGGTG CGCCGCGCGT GGCTTACGCT GATTCTGCTG GCCGCTGTCC TGGTCGGCAA CTGGAAACTG TTTGAGACCG TACCCAAATC CTTCCTTCCT CCGGAAGACA AGGGCACCGT TTTCTGTGAT ATCCAGCTGG CCCCTGGCGC CACGCTGGGC CGTACGGAAC AGGCCATGCG CAGTGCGGAA CAGAAGCTGA TGAGCATCCC CGGCGTGCGC CAGGTTTCCT CCACTTCCGG ATTCAGCTTC ATGGGCGGCA ACGGGGAAAA CCTGGGCATG TGCATCGCCC AGCTTGACCC CTGGGACAAA CGCAAGACGC CGGAGCTTTC CCTGGATTCC ATCATGCAGA AAGCTTCCAT CCTGTGTGAT GAAATTCCGG CGGCCAAGGC CACCGTGTTC AGCCCGCCCG CCATCATGGG GCTGGGCCTG ACGGGCGGCG TCTCCTTCAT GCTCCAGGCC AGCGGGGAGG AAACTCCCAA GGACCTGGAA CGAGTGACCA ACGACCTGCT GGACAAAATC AACAAACTGC CGGGAACCAT GTACGCCCGC AGCGCGTATG AGGCGAACAC CCCCCAGCTT TTCCTGAACA TCGACCGTGA AAAGGCGCAG AGCATGCACG TGCCCGTCAG CCGCATCTTC ACGACGCTTC AAAGCAAGCT GGCCTCCATG TACATCAATG ATTTCAACCT GATCGGCTAC ACGTTCAAGG TGAAGATGCA GTCCGCGGCA GAGGACCGCA CCACCATCAA TGACATCATG AACACCTACA TTCAGAACGA TCAGGGCCAG ATGGTGCCTC TCAGCTCCGT AGCCACCCTG TCTTACATGG TGGGGCCGCG GCAAATATCC CGTTTCAACC AGCTCATGTC CGCAGAAGTG ACCGCCCAGG CAAAACCCGG CGTCAGCAGC GGCGAGCTGA TGAACCAGAT TGAGGCTATT CCGCTGCCGG AAAATTACTC CATCACCTGG ACGGACATGA GCTATCAGGA ACGGCAGAAC GATGGGAAAA TCGTCCTGCT GATGGGTATG GCCCTGCTCT TCGGCTACCT GTTCCTGGTG GCGCAATATG AAAGCTGGAC GGTTCCCATT TCCGTCATTG TCTCCGTCTC CGTCGCCCTG TTGGGCGCTT TGCTCGGCCT GATTATCTGC AACACGCCCC TGAGCATTTA CGCTCAGCTC GGCCTGGTGA TGCTGGTGGG CCTGGCCGGG AAAAACGCTA TTCTGATGGT GGAGTTCTCC AAAATGGAGC GGGAGCGCGG CGTTCCCATC CAGGAAGCCG CCCTGGAAGG AGCCCGGCAG CGCTTCCGCG CCGTGATGAT GACGGCCATT TCCTTCATCA TCGGGGTATT CCCCATGGTC ATCGCCTCCG GAGCGGGCGC GGCAAGCCGC AAAGCCATTG GCATCTCCAC CTTCTACGGC ATGATTCTCG CAACAGTAGT GGGCATTCTG TTCATTCCGG CCCTGTACGC CATGTTCCAG CGTTACCGCG AATGGGTGAA AGGCCTGTTT GCCAGAAAGG CGGAATAA
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Protein sequence | MIADLFIKRP KFAIVIAILM MLAGGICLNQ LPIAEYPEIA PTSINVQATY TGASAQVVME TLASPIEEEL NGLENLLYFS SKSDNTGGYS LSLTFKSGTN SDINMVNVQN ALKRVEYKLP KEVTDQGIKI KKRSSDILGF FAFRSTSMSS LELNNFVKTR VKDEVARVPG ISAVNLMPEK NYSMRIWLDA LRMSALNITP DDVSNAIKAQ NVQAAAGSIG SEGENNFIQY KVNVTGRLQT VEEFSKIIVR TGQDGHVTRL DDIARIELGA ETYTGSSRNN GEDSVNMAVY RLDDANALEA MNGVKDTLEK LEKRFPEGVS YVVSYDPTQY ISATMAEIVE TLVIALILVV GITYLFLQDW RATLIPALAI PVSLIGTFAI LLPLGFSINV LTMFGLILVI GSLVDDGIIV VENTMRILET EDLSPEEATR KSMHQITGAI IATTLVTVAI YVPIAFFGGM VGNIYMQFSV TMCVALCLSA INSLTLSPAL CVLLLKRKQK KQSRFSLFRP FNVSLEWARK SYIKCAGIMV RRAWLTLILL AAVLVGNWKL FETVPKSFLP PEDKGTVFCD IQLAPGATLG RTEQAMRSAE QKLMSIPGVR QVSSTSGFSF MGGNGENLGM CIAQLDPWDK RKTPELSLDS IMQKASILCD EIPAAKATVF SPPAIMGLGL TGGVSFMLQA SGEETPKDLE RVTNDLLDKI NKLPGTMYAR SAYEANTPQL FLNIDREKAQ SMHVPVSRIF TTLQSKLASM YINDFNLIGY TFKVKMQSAA EDRTTINDIM NTYIQNDQGQ MVPLSSVATL SYMVGPRQIS RFNQLMSAEV TAQAKPGVSS GELMNQIEAI PLPENYSITW TDMSYQERQN DGKIVLLMGM ALLFGYLFLV AQYESWTVPI SVIVSVSVAL LGALLGLIIC NTPLSIYAQL GLVMLVGLAG KNAILMVEFS KMERERGVPI QEAALEGARQ RFRAVMMTAI SFIIGVFPMV IASGAGAASR KAIGISTFYG MILATVVGIL FIPALYAMFQ RYREWVKGLF ARKAE
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