Gene Amuc_1983 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAmuc_1983 
Symbol 
ID6273988 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAkkermansia muciniphila ATCC BAA-835 
KingdomBacteria 
Replicon accessionNC_010655 
Strand
Start bp2406105 
End bp2408249 
Gene Length2145 bp 
Protein Length714 aa 
Translation table11 
GC content60% 
IMG OID642614043 
Productmethylmalonyl-CoA mutase 
Protein accessionYP_001878575 
Protein GI187736463 
COG category[I] Lipid transport and metabolism 
COG ID[COG1884] Methylmalonyl-CoA mutase, N-terminal domain/subunit
[COG2185] Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) 
TIGRFAM ID[TIGR00640] methylmalonyl-CoA mutase C-terminal domain
[TIGR00641] methylmalonyl-CoA mutase N-terminal domain 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.774356 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones40 
Fosmid unclonability p-value0.0211504 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCAATA TTCCTGATTT TGCATCCGCC TCCTATCCTG AAATCAAGGC TGGTGCCCCG 
TCCCCGGCTT CCGAAACGGA AACCTGGATG ACCAATGAAC AAATTCCCGT GCCGCCCACC
TACTCGGAAA GCGTGTACGA CGACTGCCTG CACCTGGACT TTACGGCCGG TGTGGCTCCC
AACCTCCGCG GACCGTATGC CACCATGTAT GTGGCGCGCC CCTGGACGGT GCGCCAGTAC
GCCGGCTTTT CCACGGCTGA GGAATCCAAT GCCTTCTACC GCCGCAACCT GGCGGCGGGC
CAGAAGGGCC TTTCCATTGC CTTTGACCTG GCGACGCACC GCGGCTATGA CTCCGATCAC
CCCCGCGTGG TGGGTGACGT GGGCAAGGCC GGCGTGGCCG TGGACTCCAT TCTGGACATG
GAAATCCTCT TCAAGGGCAT TCCCCTGGAC AAAATGTCCG TTTCCATGAC CATGAACGGC
GCCGTGTTGC CCGTGCTGGC CTTCTACATC GTCGCCGCCC AGGAACAGGG CTGCACGCTG
GACCAGCTCT CCGGCACGAT CCAGAATGAC ATTCTCAAGG AATACATGGT GCGCAACACC
TACATTTACC CGCCTGATCC CTCCATGAGG ATTATTGCGG ACATCTTTGA GTTCACCTCC
AAGTACATGC CCAAGTTTAA CTCCATTTCC ATCTCCGGCT ACCACATGCA GGAGGCCGGC
GCTACGGCGG ACCTGGAAAT GGCCTACACC CTTGCGGACG GCCTAGAATA TGTCCGCACC
GGGATCAAGG CGGGCATTGA CATTGACGCC TTCGCGCCGC GTCTTTCCTT CTTCTGGGCC
CAGGGCAAGA ATTACTTCAT GGAAGTGGCC AAAATGCGCG CCGCCCGCGT GCTGTGGGCC
AAACTCATCA AGCAGTTCAA TCCCAAGAAC CCGAAGTCCC TGGCCTTGCG CACGCACTCC
CAGACTTCCG GCTGGTCCCT CACGGAACAG GACCCGTTCA ACAACGTCAC CCGCACCTGC
ATTGAGGCCC TAGCCGCTGC CTGCGGCCAT ACGCAGTCCC TGCACACGAA CTCCCTGGAC
GAAGCGATTG CCCTGCCGAC GGACTTCTCC GCCCGCATCG CCCGCAACAC CCAGCTTCAT
CTTCAGGATG AAACCACCAT CTGCAAGGTA ATCGACCCGT GGGGCGGTTC CTACTATGTG
GAATACCTGA CCAATGAGCT CATTCGCAAG GGCTGGGCCC ACCTTCAGGA AGTGGAAAAA
CTCGGAGGCA TGGCCAAGGC CATTGAAACC GGGCTGCCCA AGATGCGCAT TGAAGAAGCC
GCAGCGCGCC GCCAGGCCGC CATTGACTCC GGAAAGGAAC CCATCATCGG CGTTAACAAA
TACCGTCTGG AACAGGAAGC CCAGATCGAT ATTCTGGAAG TGGACAACAC CACCGTCCGG
GAAGCCCAGA TCGCCCGCCT GCAGAAACTG CGCGCGGAAC GGGACTCCGC CGCGTGCGAA
GCCGCGCTGG AAGCCCTGTC CGAATGCGCC CGCACGGGGG AAGGCAATCT CCTTGACCTT
GCCATCAAGG CGGCCAAGGC CCGCGCCTCC CTGGGTGAAA TCTCCTCCGC CCTGGAAAAA
CACTTCGGGC GTCATAAAGC ACCAATCAAA CTCATTACCG GCGTGTACGC TCAATCCTAT
GGTCAAGATC CGCTGGTGGA GGAAGTCCGC AAGATGACGG ATGACTTCGC CGAACGCACG
GGGCGTCGTC CCCGCATCCT TGTCGCCAAA ATGGGCCAGG ACGGCCATGA CCGCGGCGCC
AAGGTGGTCT CCTCCGCCTA TGCCGACCTC GGTTTTGACG TGGACGTGGG CCCGCTCTTC
CAGACGCCGG AGGAAACTGC CAAAATGGCG ATTGAAAACG ACGTGCACAT GATCGGCATG
AGCTCTCTGG CCGCCGGCCA CAAGGTTCTC CTTCCCGCCC TGGTGGAGGA ACTTGCCAAG
CAGGGCCGTC CGGATATCCT GGTCTTCTGC GGCGGCGTTA TTCCCGCCCA GGACTATGAC
TTCCTGAAGG AACACGGAGC TGTGGCCATC TTCGGCCCGG GCACCAACAT TCCGGAAGCT
TCCAGGGAAA TCATGGAAGC TCTTAACGAA CAGTACGCTG ACTAA
 
Protein sequence
MSNIPDFASA SYPEIKAGAP SPASETETWM TNEQIPVPPT YSESVYDDCL HLDFTAGVAP 
NLRGPYATMY VARPWTVRQY AGFSTAEESN AFYRRNLAAG QKGLSIAFDL ATHRGYDSDH
PRVVGDVGKA GVAVDSILDM EILFKGIPLD KMSVSMTMNG AVLPVLAFYI VAAQEQGCTL
DQLSGTIQND ILKEYMVRNT YIYPPDPSMR IIADIFEFTS KYMPKFNSIS ISGYHMQEAG
ATADLEMAYT LADGLEYVRT GIKAGIDIDA FAPRLSFFWA QGKNYFMEVA KMRAARVLWA
KLIKQFNPKN PKSLALRTHS QTSGWSLTEQ DPFNNVTRTC IEALAAACGH TQSLHTNSLD
EAIALPTDFS ARIARNTQLH LQDETTICKV IDPWGGSYYV EYLTNELIRK GWAHLQEVEK
LGGMAKAIET GLPKMRIEEA AARRQAAIDS GKEPIIGVNK YRLEQEAQID ILEVDNTTVR
EAQIARLQKL RAERDSAACE AALEALSECA RTGEGNLLDL AIKAAKARAS LGEISSALEK
HFGRHKAPIK LITGVYAQSY GQDPLVEEVR KMTDDFAERT GRRPRILVAK MGQDGHDRGA
KVVSSAYADL GFDVDVGPLF QTPEETAKMA IENDVHMIGM SSLAAGHKVL LPALVEELAK
QGRPDILVFC GGVIPAQDYD FLKEHGAVAI FGPGTNIPEA SREIMEALNE QYAD