Gene Amuc_1963 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAmuc_1963 
Symbol 
ID6275006 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAkkermansia muciniphila ATCC BAA-835 
KingdomBacteria 
Replicon accessionNC_010655 
Strand
Start bp2382199 
End bp2382702 
Gene Length504 bp 
Protein Length167 aa 
Translation table11 
GC content56% 
IMG OID642614024 
Producthypothetical protein 
Protein accessionYP_001878557 
Protein GI187736445 
COG category[S] Function unknown 
COG ID[COG3610] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.0436579 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value0.000913146 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAATCCGG ATCTTATTTC CTCCATCCTT CTGGACGGGC TGATGGCCGC CATTGCCGCC 
ACGGGATTTG CCGTCATCTC CAATCCGCCC AGGCGCGCCA TTGCCGTTTC CGCCGTTCTG
GCGGCCGTCG GCCACGCTTT CCGCTTTTAC ATGCTGCACT CCTGGACCAT TGACATTTCC
AGCGCCACCT TCATTGCCGC CTTCACCATA GGCATGCTGG GCGTCATGAC GGCCAAGCTG
GTGAAGTGCC CGGCGGAAAT ATTCGCTTTC CCTTCCCTGC TTCCCATGAT TCCCGGCGTG
TACGCCTATA AGACCATCCT GGCCCTGATG CAGTTTATGC AGGAGAACCA GGACGCGGCC
GTCATGAACC GTCTGATTGT GGACATCTGC AAAAACGGCA TCACCGCCTT CTTCATCATC
TTTTCGCTGG TTATCGGAGT AGCCATACCC ATGCTGATGT TCAAACGGTT GAGCTATACA
CGCATCATCA AGCCGGGGCA TTGA
 
Protein sequence
MNPDLISSIL LDGLMAAIAA TGFAVISNPP RRAIAVSAVL AAVGHAFRFY MLHSWTIDIS 
SATFIAAFTI GMLGVMTAKL VKCPAEIFAF PSLLPMIPGV YAYKTILALM QFMQENQDAA
VMNRLIVDIC KNGITAFFII FSLVIGVAIP MLMFKRLSYT RIIKPGH