Gene Amuc_1928 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAmuc_1928 
Symbol 
ID6275281 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAkkermansia muciniphila ATCC BAA-835 
KingdomBacteria 
Replicon accessionNC_010655 
Strand
Start bp2340651 
End bp2341574 
Gene Length924 bp 
Protein Length307 aa 
Translation table11 
GC content52% 
IMG OID642613988 
Productperiplasmic binding protein 
Protein accessionYP_001878522 
Protein GI187736410 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG4607] ABC-type enterochelin transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.967613 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones40 
Fosmid unclonability p-value0.0105947 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGAACAA CAATCACCGC ATTTCTGGCC GCATTGATTC TTCCCGGTCT TTCCATGGCC 
GCCGCAGATG AAGCCAAAAC AATCACCGCC ACGCACACGC TGGGCACGGT CGAGCTTCCG
GTCAATCCGA AACGTGTCGC CGTGCTGGAC TACGGTTCGC TTGAGACCAT CGGTGAACTG
GGCGTCACTC CCGCGCTGGC TTTACCCAAA AAATTCCTTC CTCCTTACCT CTCCAAATTC
TCCGGAGAAC AATATACGGA TCTTGGAACG GTTAAGGAAT TCAATATTGA AACCATCAAT
GCGTTCAAGC CGGACTTGAT TATTATTTCA GGACGTCAGC AGGATTATTA TCAAAAACTT
TCCTCCATCG CCCCCGTTTA CCTGGTCGAT ACTCTGGCCA AGGATCAGCT GGGGGAAGCC
AAGAAAAACA TCAGGCTTCT GGGTGATGTG TTCGGCGTGC CCGAAAAGGC AGCCGAAGCC
GTCAAAAACA TTGATGAAGC CGTAACCCGT ACGAAGGACA AGGCCCAGGC CAGCGGCAAG
AAAGCTCTCG TTCTCCTTAC GAACGACGGC AAGGTAAGCG CTTACGGTTC GGGTTCCCGC
TTTGGGTTGG TACACGATGC CCTGGGAGTG GCCCAGGCTG ATAAAAACAT CAAGGTGGGG
GTTCATGGGC AGCAGGTGAC TTATGAATAC ATTGCCATGC TCAATCCCGA TATCATCTTT
GCGGTGGACC GTTCGGTAGC TATCGGCCGC TCGGCCAAAA ATCCGAATGT CCTCAACAAT
GTGCTTGTGA ATAAAACGAA GGCGGCTAAA AACGGCGCCA TCATCCTGCT TGACCCGCAG
GTATGGTATC TTTCCGGCGG CGGCATCATT TCTCTGAACA AGATGATCTC TGAAGTGGAA
GCTGCCTTTA CGGACAAAAA ATAA
 
Protein sequence
MRTTITAFLA ALILPGLSMA AADEAKTITA THTLGTVELP VNPKRVAVLD YGSLETIGEL 
GVTPALALPK KFLPPYLSKF SGEQYTDLGT VKEFNIETIN AFKPDLIIIS GRQQDYYQKL
SSIAPVYLVD TLAKDQLGEA KKNIRLLGDV FGVPEKAAEA VKNIDEAVTR TKDKAQASGK
KALVLLTNDG KVSAYGSGSR FGLVHDALGV AQADKNIKVG VHGQQVTYEY IAMLNPDIIF
AVDRSVAIGR SAKNPNVLNN VLVNKTKAAK NGAIILLDPQ VWYLSGGGII SLNKMISEVE
AAFTDKK