Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Amuc_1928 |
Symbol | |
ID | 6275281 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Akkermansia muciniphila ATCC BAA-835 |
Kingdom | Bacteria |
Replicon accession | NC_010655 |
Strand | - |
Start bp | 2340651 |
End bp | 2341574 |
Gene Length | 924 bp |
Protein Length | 307 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 642613988 |
Product | periplasmic binding protein |
Protein accession | YP_001878522 |
Protein GI | 187736410 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG4607] ABC-type enterochelin transport system, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.967613 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 40 |
Fosmid unclonability p-value | 0.0105947 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGAACAA CAATCACCGC ATTTCTGGCC GCATTGATTC TTCCCGGTCT TTCCATGGCC GCCGCAGATG AAGCCAAAAC AATCACCGCC ACGCACACGC TGGGCACGGT CGAGCTTCCG GTCAATCCGA AACGTGTCGC CGTGCTGGAC TACGGTTCGC TTGAGACCAT CGGTGAACTG GGCGTCACTC CCGCGCTGGC TTTACCCAAA AAATTCCTTC CTCCTTACCT CTCCAAATTC TCCGGAGAAC AATATACGGA TCTTGGAACG GTTAAGGAAT TCAATATTGA AACCATCAAT GCGTTCAAGC CGGACTTGAT TATTATTTCA GGACGTCAGC AGGATTATTA TCAAAAACTT TCCTCCATCG CCCCCGTTTA CCTGGTCGAT ACTCTGGCCA AGGATCAGCT GGGGGAAGCC AAGAAAAACA TCAGGCTTCT GGGTGATGTG TTCGGCGTGC CCGAAAAGGC AGCCGAAGCC GTCAAAAACA TTGATGAAGC CGTAACCCGT ACGAAGGACA AGGCCCAGGC CAGCGGCAAG AAAGCTCTCG TTCTCCTTAC GAACGACGGC AAGGTAAGCG CTTACGGTTC GGGTTCCCGC TTTGGGTTGG TACACGATGC CCTGGGAGTG GCCCAGGCTG ATAAAAACAT CAAGGTGGGG GTTCATGGGC AGCAGGTGAC TTATGAATAC ATTGCCATGC TCAATCCCGA TATCATCTTT GCGGTGGACC GTTCGGTAGC TATCGGCCGC TCGGCCAAAA ATCCGAATGT CCTCAACAAT GTGCTTGTGA ATAAAACGAA GGCGGCTAAA AACGGCGCCA TCATCCTGCT TGACCCGCAG GTATGGTATC TTTCCGGCGG CGGCATCATT TCTCTGAACA AGATGATCTC TGAAGTGGAA GCTGCCTTTA CGGACAAAAA ATAA
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Protein sequence | MRTTITAFLA ALILPGLSMA AADEAKTITA THTLGTVELP VNPKRVAVLD YGSLETIGEL GVTPALALPK KFLPPYLSKF SGEQYTDLGT VKEFNIETIN AFKPDLIIIS GRQQDYYQKL SSIAPVYLVD TLAKDQLGEA KKNIRLLGDV FGVPEKAAEA VKNIDEAVTR TKDKAQASGK KALVLLTNDG KVSAYGSGSR FGLVHDALGV AQADKNIKVG VHGQQVTYEY IAMLNPDIIF AVDRSVAIGR SAKNPNVLNN VLVNKTKAAK NGAIILLDPQ VWYLSGGGII SLNKMISEVE AAFTDKK
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