| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amuc_1863 |
|---|
| Symbol | |
|---|
| ID | 6275489 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Akkermansia muciniphila ATCC BAA-835 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010655 |
|---|
| Strand | - |
|---|
| Start bp | 2266633 |
|---|
| End bp | 2267133 |
|---|
| Gene Length | 501 bp |
|---|
| Protein Length | 166 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 642613924 |
|---|
| Product | single-strand binding protein |
|---|
| Protein accession | YP_001878458 |
|---|
| Protein GI | 187736346 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0629] Single-stranded DNA-binding protein |
|---|
| TIGRFAM ID | [TIGR00621] single stranded DNA-binding protein (ssb) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 54 |
|---|
| Fosmid unclonability p-value | 0.621974 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCAATC TCAACAAAGT CTTCTTAATG GGCAACCTTA CCGCTGATCC CGAACTGCGC
TACACTCCCA AAGGAACCGC CGTTACGGAC ATCCGCCTTG CCATCAACCG TTACTACGCG
GGCGACAACA GCGAACGCCA GGAAGAAACC ACTTTCGTGG ACGTCACCCT TTGGAACCGC
CAGGCGGAAG TTGCCGGCAA CTACCTCAGC AAGGGCCGCG GAGTCTTTGT GGAAGGACGC
CTTCAACTGG ATTCCTGGGA AGATAAAGCC TCCGGGCAGA AACGCACCAA GCTGCGCGTG
ATTGGGGAAA ACATCCAGCT CTTCCCCCGC GGCGGTGAAG GCGATATGGG AGGTGCTCCG
CGCCAGCAGT ACCAGAATGC TCCCCGTTCC AACAACTACG GACAATCCCG CCCGGCCCAG
AACTACAACC CGCCCCCCAT GCCCCCCACC AATCAGCCGT CCAACGACTT CGGAGACATG
GACGACGAAA TCCCGTTCTA A
|
|---|
| Protein sequence | MANLNKVFLM GNLTADPELR YTPKGTAVTD IRLAINRYYA GDNSERQEET TFVDVTLWNR
QAEVAGNYLS KGRGVFVEGR LQLDSWEDKA SGQKRTKLRV IGENIQLFPR GGEGDMGGAP
RQQYQNAPRS NNYGQSRPAQ NYNPPPMPPT NQPSNDFGDM DDEIPF
|
|---|
| |