| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amuc_1658 |
|---|
| Symbol | |
|---|
| ID | 6275794 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Akkermansia muciniphila ATCC BAA-835 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010655 |
|---|
| Strand | + |
|---|
| Start bp | 2004200 |
|---|
| End bp | 2006137 |
|---|
| Gene Length | 1938 bp |
|---|
| Protein Length | 645 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 642613717 |
|---|
| Product | arginine decarboxylase |
|---|
| Protein accession | YP_001878258 |
|---|
| Protein GI | 187736146 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1166] Arginine decarboxylase (spermidine biosynthesis) |
|---|
| TIGRFAM ID | [TIGR01273] arginine decarboxylase, biosynthetic |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.944199 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 41 |
|---|
| Fosmid unclonability p-value | 0.0506092 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGCAG CTAAAGAAGG CATCAAGCAG AAAGTCCGCG GGTGGAGTCA CCATGATTCC
GCAGATTTGT ACGGCATTGA CGATTGGGGG AACGGTTATT TTCGCATCAG CAAAAAGGGA
GAGGTTACCG TACGCCTGAA TGACGAGGAT GGAGGAAAGA AGGATGTCAG CCTGTGCGAT
TTGCTGGAGG GGCTGAAGGA GCGTGGGACT ACCGTTCCCG TTCTGTTCCG GTTCCGGGAT
TTGCTGCGCA GCCGTATTGC GGAGCTGAAC GACAGTTTCC GGAAAGCAAT CAAGGAGGCG
GGGTACCAGG GTAAGTACCA GGGCGTTTAC CCAATCAAGG TGAACCAGCA GCGCCAGGTG
GTGGAGGAGA TTGCGGAGTT CGGCACCAAG TATGATTATG GTCTGGAGGC CGGTTCCAAG
CCGGAGCTGA TAGCCGCCAT GGCCCATATG CACAATCCGA ATGCCTATCT GATTTGCAAC
GGGTACAAGG ATGACGAGTT TATTGACCTG GCGTTGACGG CCCAGAAGAT GGGGCTGAAT
ATTTTTATCG TGCTGGAAAT GCCTTCCGAG CTGGACGTTA TTCTGGAGCG CGCCAGAAGG
ATGGATATCC GCCCTAATCT GGGCGTGCGC GTCAAGCTGG CGGCCAAGGG GTCCGGATTA
TGGCAGGAAT CCGCGGGGGA TAAGTCCGTT TTCGGGCTGA ACGCAGCCCA GGTGGTGGAT
GTGGTGGATA AGCTGAAGCA GGTGGATGCG CTGGACTGCC TGAAGCTGCT CCATTATCAT
CAGGGGTCCC AGATTCCAAA TATTTCCGTG GTGCGCGAGG GGCTGACGGA GGCGGTCCGC
ATTTACGTGG ACCTGGTGAA GGAGGGCGCC CCTCTGGGCA CGCTGGACAT GGGCGGCGGC
CTGGCCGTGG ATTATGACGG TTCCAAGACG AATTTCCATT CTTCCTGCAA TTATTCCATT
GCGGAGTTTG CCCGTGACGT GGTGGAGGTT GTGGGAGACA TGTGTTCCAA GTACGGGGTT
CCCCATCCCA CGCTGGTGAC GGAGTCCGGA CGGGCCGTAG TGGCCTATTA TTCCGTGCTG
GTGTTCAACG TGCTGGATGT GACGAGCGCT CCGGGCGAGG AACCTCCGCC CGAGCTTCCG
GATGACGCTC CGGAGCTGTT GAAGGCTTTT GCGGACACGG ACCGGACGCT GGCCAGGAAG
AATATGCAGG AGTGCTATAA TGACGCCTGT TATTACCGGG ATCAGTTGAG AGCCCAGTTT
TTTTACGGGA ACGCCACCCT GCGGCAGCGC GGGCTGGGAG AGGCTTATTA TTGGCATATC
CTGAGCCGCA TTTCCCGCAT GCTGGCGGAG ATGGAGACCA TTCCGGAGGA TCTCAGGGAG
CTTTCCTGCT CCATGGTGGA CTTTTATTAC GGCAATTTTT CACTGTTCCA GTCTCTTCCG
GATTCCTGGG CCATCCGCCA GCTTTTCCCC GTGATGCCTC TGCACCGTTT GAATGAACGG
CCCACGAATA AGGCCGTGCT GGCAGACATC ACGTGCGATT GCGACGGAAA GATAGACCAT
TTCATTGACC GTGAGGACGT GGCAACCGCC CTCCCCCTGC ATGCCATCAA ACCCGGCGAG
GACGATTATT ACATAGGCGT ATTCCTGGTA GGAGCCTATC AGGAGACCTT GGGGGATTTG
CATAACCTGC TGGGAGATAC GAATGTGGTT GGCGTGCATC TGGAAGGCGG CCGCCCCGTT
TATACCCATG AAGTGGAGGG CGATACGGTG TCCGATGTCC TTTCCTACGT GGAGTATGAT
CCCAAGGAGT TGATCAACAA GTTCCGCACG TTTGCGGAGC AAGCCGTAGC CGAGGGGAAA
ATATCTCCGT CCGAACGCCG GAGAGCCTTG GAAGTGTTCC GTTCCGGATT GAATGGATAC
ACTTATTACG AACTGTAG
|
|---|
| Protein sequence | MAAAKEGIKQ KVRGWSHHDS ADLYGIDDWG NGYFRISKKG EVTVRLNDED GGKKDVSLCD
LLEGLKERGT TVPVLFRFRD LLRSRIAELN DSFRKAIKEA GYQGKYQGVY PIKVNQQRQV
VEEIAEFGTK YDYGLEAGSK PELIAAMAHM HNPNAYLICN GYKDDEFIDL ALTAQKMGLN
IFIVLEMPSE LDVILERARR MDIRPNLGVR VKLAAKGSGL WQESAGDKSV FGLNAAQVVD
VVDKLKQVDA LDCLKLLHYH QGSQIPNISV VREGLTEAVR IYVDLVKEGA PLGTLDMGGG
LAVDYDGSKT NFHSSCNYSI AEFARDVVEV VGDMCSKYGV PHPTLVTESG RAVVAYYSVL
VFNVLDVTSA PGEEPPPELP DDAPELLKAF ADTDRTLARK NMQECYNDAC YYRDQLRAQF
FYGNATLRQR GLGEAYYWHI LSRISRMLAE METIPEDLRE LSCSMVDFYY GNFSLFQSLP
DSWAIRQLFP VMPLHRLNER PTNKAVLADI TCDCDGKIDH FIDREDVATA LPLHAIKPGE
DDYYIGVFLV GAYQETLGDL HNLLGDTNVV GVHLEGGRPV YTHEVEGDTV SDVLSYVEYD
PKELINKFRT FAEQAVAEGK ISPSERRRAL EVFRSGLNGY TYYEL
|
|---|
| |