| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amuc_1654 |
|---|
| Symbol | |
|---|
| ID | 6275678 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Akkermansia muciniphila ATCC BAA-835 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010655 |
|---|
| Strand | - |
|---|
| Start bp | 1997261 |
|---|
| End bp | 1999834 |
|---|
| Gene Length | 2574 bp |
|---|
| Protein Length | 857 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 642613713 |
|---|
| Product | leucyl-tRNA synthetase |
|---|
| Protein accession | YP_001878254 |
|---|
| Protein GI | 187736142 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0495] Leucyl-tRNA synthetase |
|---|
| TIGRFAM ID | [TIGR00396] leucyl-tRNA synthetase, eubacterial and mitochondrial family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 43 |
|---|
| Fosmid unclonability p-value | 0.119933 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGAGC GCAAGAAACC ATATCCCTTT GACGTTTTTG AACCTAAATG GCAACAGATC
TGGGACGAGA GGAAAACCTT TAAAGTAAAT AACCCCGGAG AAGAGGGCTT TGATGCGTCC
AAACCCAAAT ACTACGTGCT GGACATGTTC CCCTACCCCA GCGGGGCGGG CCTGCATGTG
GGCCATCCGG AAGGGTACAC CGCCACGGAC ATTGTAGCGC GTTTCAAACG CATGAACGGC
TTCAACGTGC TCCATCCCAT GGGGTGGGAC TCCTTCGGCC TTCCGGCGGA ACAATACGCC
ATTAAAACCG GACAGCACCC CTCCGTCACT ACCTTCCGGA ATATAGACAA CTTCCGCCGC
CAGCTCAAAA TGCTGGGGTT CTCTTACGAC TGGGACCGGG AAATAGCAAC AACGGACCAT
GAATACGTCC GTTGGACCCA GTGGATATTC CTCCAGCTTT ACAACTCCTA CTACAACAAG
GAACTGAAAA AGGCGCGCCC CGTTTCCGAA CTGGAGGAAC AGGGATTGAG CCGGGAAGAA
ATCGACCAGC GCCGGCTGGC CTACGTAGCG GAAGCTGCCG TCAACTGGTC CCCGGACCTG
GGGACCGTCC TTGCCAATGA GGAAGTGGAG GAATGGAAAT CCAAGGGACA CCGCGTGGAA
CGCCGCCCCC TGCGCCAGTG GATGCTGCGC ATCACGGACT ACGCGGAACG CCTCATTGAC
GAGCTGGAGC CCCTGGACTG GCCGGAATCC ATTAAACTGC TTCAGCGCAA CTGGATAGGC
AAATCGGAAG GTGCGGAAGT GGACTTCACC TTGGACGGAG AAACGATCAC TGTTTACACC
ACCAGGCCGG ACACCCTCTT TGGAGCCACC TACATGGTTC TTTCCCCGGA GCACCCTCTG
GTAGATACCG TCACCACGCC GGAACAGAAA CATGCTGTGG AACAATACCG CGCCCAGTGC
GCCTCCAAAA GCGACCTGGA ACGCACGGAC CTCTCCAAGG AAAAAACAGG GGTCTTCACC
GGAGCCTATG CCGTCAATCC GGTCAATGGA AAACAAATTC CCGTCTGGAT CGCGGACTAT
GTGCTGATGG GTTACGGAAC CGGAGCCATC ATGGCCGTCC CCGCCCATGA CGAACGCGAC
TTCGCCTTTG CCCAGGTCTT CGGCCTGCCC ATACTCCAGG TAGTTCAGCC GCCCAGTGAA
GACACGGACT GGCGCGGCTT CTGCGGTTAT GAAGGTTCCA GCGTGAACTC CGGCTTCCTG
ACCGGGCTGC CTACTCCGGA AGCCAAGGAA AAAATGATCC TCTGGCTGGA AGAAAACGGC
AAGGGACGCC GCAAAGTAAA CTACAAGCTG CGCGACTGGC TCTTCTCCCG CCAGCGTTAC
TGGGGGGAAC CATTCCCCAT CGTATGGGAA GACGGTCGCC ACCGCGCCCT GCCGGAAAGC
GAACTCCCCG TACTCCAGCC GGATCTGGAC GACTTCGCCC CCACGGGAGA CCCCCGCGGC
CCGCTGGTCA AGGCTGCGGA ATGGATAGCC TACACGCCCA CAGCCCACCG GGAAACAAAC
ACCATGCCCC AATGGGCCGG CTCCTGCTGG TACTACCTGC GTTACCTGGA TCCGGCCAAC
ACGGAACGCT TCGTCAGCCG GGAAGCGGAA CAATACTGGA TGGGCTCCGC CGGCTCCCCC
GGAGGCGTGG ACCTGTACGT GGGCGGCACG GAACACGCCG TGCTCCACCT TCTCTATGCC
CGCTTCTGGC ACAAGGTGCT CTTTGACCTG GGCTACCTCA GCACCAATGA ACCCTTCCAA
AAACTCGTCA ACCAGGGGCT CATCCTAGGG GAAGACGGCC AGAAAATGTC CAAATCCCGC
GGCAACGTCG TCAATCCGGA CGACATCGTC CGCGAATATG GCGCGGACTC CCTGCGGTTA
TATGAAATGT TCATGGGCCC TCTCAAGGAC GTGAAACCTT GGGCAACCAA AGGTGTGGAA
GGCATTTCCC GCTTCCTGGC CCGCGTCTGG CGCGTGGCCT TCCGGGAAAA TCAGGAAGGA
GAATGGGAAA TCAACTCCAA ACTGGTGGAG AACGCTCCGG AAGCCGGGGT GCTTGCCGTA
CGCAAGGAAT TGCACAAAAC CATTAAAAAA GTGACGGAGG ACATCAATGG CATGTCCTTC
AACACCGCCA TCGCGAAAAT GATGGAATGC ACCAATGCCA TGACCTCCGC GGATGTGGTG
GACGTTCAGG ACTATGATGC TTTCCTGACT CTGCTGAATC CCTTTGCCCC CCACCTTACG
GAAGAAATAC ACAGCCGCCT GCAAACAGCC TTCCCGGCTC TGGCCCAGAC GCAGCTTTGC
CAGAAAAGCT GGCCTGAATG GGAGGAAGCC CTGCTGGAGG AAAATACCGT TCCCATGGTC
ATCCAGGTGA ACGGCAAGCT GAGGGACAAA CTGGAAGTGC CCAAGGACAT CTCCCGGGAA
GAACTGGAAA AACAGGCCCT GGCTTCCGCC AAGGTGAAAA CCTTCCTGGA CGGCGTCACT
GTGCGCAAGG TAATTGTCGT ACCCGGCCGC CTCGTCAACA TTGTAGCCAA CTGA
|
|---|
| Protein sequence | MSERKKPYPF DVFEPKWQQI WDERKTFKVN NPGEEGFDAS KPKYYVLDMF PYPSGAGLHV
GHPEGYTATD IVARFKRMNG FNVLHPMGWD SFGLPAEQYA IKTGQHPSVT TFRNIDNFRR
QLKMLGFSYD WDREIATTDH EYVRWTQWIF LQLYNSYYNK ELKKARPVSE LEEQGLSREE
IDQRRLAYVA EAAVNWSPDL GTVLANEEVE EWKSKGHRVE RRPLRQWMLR ITDYAERLID
ELEPLDWPES IKLLQRNWIG KSEGAEVDFT LDGETITVYT TRPDTLFGAT YMVLSPEHPL
VDTVTTPEQK HAVEQYRAQC ASKSDLERTD LSKEKTGVFT GAYAVNPVNG KQIPVWIADY
VLMGYGTGAI MAVPAHDERD FAFAQVFGLP ILQVVQPPSE DTDWRGFCGY EGSSVNSGFL
TGLPTPEAKE KMILWLEENG KGRRKVNYKL RDWLFSRQRY WGEPFPIVWE DGRHRALPES
ELPVLQPDLD DFAPTGDPRG PLVKAAEWIA YTPTAHRETN TMPQWAGSCW YYLRYLDPAN
TERFVSREAE QYWMGSAGSP GGVDLYVGGT EHAVLHLLYA RFWHKVLFDL GYLSTNEPFQ
KLVNQGLILG EDGQKMSKSR GNVVNPDDIV REYGADSLRL YEMFMGPLKD VKPWATKGVE
GISRFLARVW RVAFRENQEG EWEINSKLVE NAPEAGVLAV RKELHKTIKK VTEDINGMSF
NTAIAKMMEC TNAMTSADVV DVQDYDAFLT LLNPFAPHLT EEIHSRLQTA FPALAQTQLC
QKSWPEWEEA LLEENTVPMV IQVNGKLRDK LEVPKDISRE ELEKQALASA KVKTFLDGVT
VRKVIVVPGR LVNIVAN
|
|---|
| |