| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amuc_1552 |
|---|
| Symbol | |
|---|
| ID | 6273653 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Akkermansia muciniphila ATCC BAA-835 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010655 |
|---|
| Strand | + |
|---|
| Start bp | 1864700 |
|---|
| End bp | 1865860 |
|---|
| Gene Length | 1161 bp |
|---|
| Protein Length | 386 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 642613611 |
|---|
| Product | major facilitator superfamily MFS_1 |
|---|
| Protein accession | YP_001878154 |
|---|
| Protein GI | 187736042 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0738] Fucose permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 58 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATATGC CTCTTCCTAA AACGACGCAA GGTGTTTATC GTCTGTCGGT CAGTACCTTT
TATTTTCTTC AGGGTTTGGT GTTCGCCAGT TGGGCATCCC GCATCCCGGA CATCAAAAGT
GCATTGGGGT TGAACGATGC CGACTTGGGG TCCGTTCTCT TTGCCGTCCC GGTGGGGCAG
ATGTCCGCCA TGGCGCTATC CGGTTACCTG GTTGGCCGTT GCGGCAGCCG GAAAATACTG
ATGGCGGCAT CCGTCTTTTA TCCTGCCGTG CTTGTATGCC TGGGTATGGC GGGGTCTTTC
TGGGAACTGG CGGCCGGGTT ATTTTTCTTT GGGGTAGCCG CAAATCTGAC GAATATATCC
GTCAATACGC AGGGAGTGGG AGTGGAACGG CTGTACCAGT GCAGCATCAT GGCCCGGTTC
CACGGTTTAT GGAGCCTGGC GGGTTTTTTC GGAGCTTTGC TGGGAGCTGC CATGGTGGAC
TGGCATATTT CTGCGGAAAC GCATTTCATC GCCATTTTCC TGATATGCAT GATTATTCTG
GCCGTTTTTT CCCCCTCTCT TCTGCCGAGG GATGCCCGGC GTTCCTCCTC CCAGGGAGGC
GGCATGTTCC GGAGCATGGA TGCTTATGTA CTGGTCATCG GGCTGATCGC CTTCGGAAGC
ATGGTGAGCG AAGGAACCAT GTTTGACTGG AGCGGCGTGT ACTTTGAAAG CGTGGTAAAA
CCCGGTCCGG GGCTGGTGCA GATGGGATAC GTGGCATTCA TGAGCACCAT GGCCCTGGGG
CGTTTTACGG CAGACCGCCT GGTGATGCGC TTCGGGCCTG TGCGGGTTCT GCGCGCCAGC
GGCATCCTTA TTGCCTCCGG ATTGCTCGTC TCCGTCCTGT TCCCGATGCT GTGGTCCGCC
ACGCTGGGCT TTCTGCTGGT GGGTTTTGGC ACCTCTTCCA TTGTCCCGCT CTGCTACAGC
ATGGCCGGGA AATCCCGGAA AATGATTCCC AGCATGGCGC TGGCTTCCGT TTCTACCATC
GGCTTTCTGG GGTTCCTGAT GGGGCCGCCG GTCATTGGTC ATATTGCCCA TGCTTCCTCC
CTCCGGTGGT CTTTCTCCCT GATTGCCCTG GTTGGACTGG GGACGGCATT CATTGCCCCT
TTCCTCAAGA AATATAGGTA A
|
|---|
| Protein sequence | MNMPLPKTTQ GVYRLSVSTF YFLQGLVFAS WASRIPDIKS ALGLNDADLG SVLFAVPVGQ
MSAMALSGYL VGRCGSRKIL MAASVFYPAV LVCLGMAGSF WELAAGLFFF GVAANLTNIS
VNTQGVGVER LYQCSIMARF HGLWSLAGFF GALLGAAMVD WHISAETHFI AIFLICMIIL
AVFSPSLLPR DARRSSSQGG GMFRSMDAYV LVIGLIAFGS MVSEGTMFDW SGVYFESVVK
PGPGLVQMGY VAFMSTMALG RFTADRLVMR FGPVRVLRAS GILIASGLLV SVLFPMLWSA
TLGFLLVGFG TSSIVPLCYS MAGKSRKMIP SMALASVSTI GFLGFLMGPP VIGHIAHASS
LRWSFSLIAL VGLGTAFIAP FLKKYR
|
|---|
| |