| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amuc_1461 |
|---|
| Symbol | |
|---|
| ID | 6275805 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Akkermansia muciniphila ATCC BAA-835 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010655 |
|---|
| Strand | + |
|---|
| Start bp | 1751967 |
|---|
| End bp | 1752704 |
|---|
| Gene Length | 738 bp |
|---|
| Protein Length | 245 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 642613521 |
|---|
| Product | protein of unknown function DUF558 |
|---|
| Protein accession | YP_001878064 |
|---|
| Protein GI | 187735952 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1385] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR00046] RNA methyltransferase, RsmE family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.7294 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 60 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCCGCT TTTTCCTCCC GCCTTCCGAA TGGGCTGCTC CCGCCTGGGA GCTGCGAGGG
GATGAAGCGC ACCATGCCGC CAAGGTTCTG CGCCTGAAGC AGGGTGACTC CTGCATCGTG
TTTGACGGTT GCGGCCGTGC GGCCCACGCT GTGGTGGCGG AACCTCCGCG CAGCTCCGGC
GTGCTGCTGG TTCCGGGGGA GGAATGTCCT CCTTCTCCCC CCGTGGCCCA TTTGACGCTG
TGCCAGGCTG TTCCCAAGGG GGCCAACATG GATCTCATTA TCCAAAAGTC TGTGGAACTG
GGTGTTTCTG CCATTGTTCC GCTCGTGACG GACCGCACGA TCGTGCGCCT GAATGCCCGG
GAGGCTGAGG CCAAAAGGCA GAAATGGCAG CGCATCGCCT TGGAGGCCTG CAAGCAGTGC
GGCCAGAACA CGCTGCCGGA AGTGGCGCTT CCCGTTCCCT TTGCGGAATG GCTGCGCGGA
GGAATTCCGG AAGGACTGAA TATTATCGCC TCTCTGGCGC CCGGAGTGCG ACCGGTCAGG
GAAGTGCTGG AGACCGCCCG TTCCCGTTCC GTCCGTCACG CTTCTCTGCT GGTGGGGCCG
GAGGGGGATT TTACGGACCG GGAGACGGCC ATGGCGTTGG AAGCGGGGTT TGTTCCCGTC
ACGCTTGGCC CTATCGTTCT CCGGGTGGAG ACGGCCGCCT TTTTCGGCCT GGCCGCCATG
CGGTACGCCC TGGACTGA
|
|---|
| Protein sequence | MARFFLPPSE WAAPAWELRG DEAHHAAKVL RLKQGDSCIV FDGCGRAAHA VVAEPPRSSG
VLLVPGEECP PSPPVAHLTL CQAVPKGANM DLIIQKSVEL GVSAIVPLVT DRTIVRLNAR
EAEAKRQKWQ RIALEACKQC GQNTLPEVAL PVPFAEWLRG GIPEGLNIIA SLAPGVRPVR
EVLETARSRS VRHASLLVGP EGDFTDRETA MALEAGFVPV TLGPIVLRVE TAAFFGLAAM
RYALD
|
|---|
| |