Gene Amuc_1396 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAmuc_1396 
Symbol 
ID6274468 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAkkermansia muciniphila ATCC BAA-835 
KingdomBacteria 
Replicon accessionNC_010655 
Strand
Start bp1667480 
End bp1669273 
Gene Length1794 bp 
Protein Length597 aa 
Translation table11 
GC content60% 
IMG OID642613453 
Productaspartyl-tRNA synthetase 
Protein accessionYP_001878001 
Protein GI187735889 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0173] Aspartyl-tRNA synthetase 
TIGRFAM ID[TIGR00459] aspartyl-tRNA synthetase, bacterial type 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000259545 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones61 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACTCAT ACCGCACTCA TACCTGCAGC GAATTGCGCG CTGCGAACAT CGGCAAGCCG 
ACCACCCTCA TCGGCTGGGT AGATTCCGTC CGGGACCATG GCGGCGTCAT ATTTATCGAC
TTGCGCGACC GCTCCGGCAT CACGCAGGTA GTCTTTCACC CGGAAGTCAA TCAGGATGTG
GCGAAAGCCT CCCAGCAGCT CCGCTCCGAA GACATGATCC AGATTTCCGG CACCGTGGCC
GCCCGCCTGA AAACGGATAC GGTGGACACG ACCAATGCGG ACCTCCCCAC CGGGGAAATC
GAAGTCTCCG CAGACACCCT GAACGTCATC AACAAGGCTG ACGTGCTCCC CTTCCAGCTG
GATCGGGCCC TCTCCAACGA AGACCTGCGC CTCAAATACC GCTTTCTGGA CCTGCGCCGC
CCGACCATGG CCCGCAACAT GCAGATCCGC CACCGCGTCA CCAAATCCAC GCGCGACTAT
CTGGACGAGC ACGGCTTTCT GGAAATTGAG ACGCCCATCC TCTCCAAATC CACGCCGGAA
GGCGCACGGG ACTTCCTGGT GCCCTCCCGC CTGGCGCCCG GCAAATTCTA CGCGCTGCCC
CAGGCCCCGC AGCAATACAA GCAGCTGCTC ATGGTAGCCG GCATGGAACG CTATTTCCAA
ATTGCCCGCT GCTTCCGTGA CGAAGACCTG CGCGCGGACC GCCAGCCGGA ATTCACCCAG
GTGGACATTG AAGCTTCCTT CATCACGCCG GAAGACATCT ACAACCTGGT GGAAGGCCTG
CTCAAACGCG TGTACAAGGA ATCCCTGGGC GTGGACATTC CCACCCCCTT CCCCCGCATG
ACCTGGAAGG AAGCAATGGA TCAGTACGGT TCCGACAAGC CGGAACGCCG CTTCGGCATG
AAGCTAACGG ACGTCTCCTC CATCTTTGAA AACAGCGGCT TCAAGGTATT CGCCTCAGCC
GTAAGCAACG GCGGCGTGGT CAAGGCCATC AACGCCAAGG GATTCGGTTC CGCCTCCGTT
GGCCAGATTG ACGCCCTGAC GAAAACTGCC GTGGAAGCCG GAGCCAAAGG CCTGGCCTAC
ATCAAGGTGC GCGAGGAAGA CTGGAGAAGC CCCATCTCCA AATTCCTTTC CGACGAAGAA
AAACAAAAAC TCACGGAAGC CCTGGACATC GAAACAGGAG ACCTCGTTCT CTTTGCCGCC
GGCCCGTGGG AACCCTCCTG CGATATCCTG GGCCGCGTGC GCCTGCAATG CGCCGAATTC
ATGGAACTGC TCAAGGACAA CAAGGAACGC GACTTCCTGT GGGTTATTGA ATTCCCGCTG
GTGGGCTGGG ATGAGGAAGA GCAGCGCTGG GTCGCCATCC ACCACCCCTT TACCCGCCCC
GTCAAGGAAG ACGAACAAAA ACTGCTCAGC GGGGAACTCT CCGCAGACCT TCGCGCGCAG
GCCTACGATG TGGTGCTCAA CGGCACGGAG CTGGGAGGCG GTTCCATCCG CATCCATGAA
CGCGACCTGC AGTCCGCCAT GTTCAAGGCG CTCGGCATCA CGGAAGAACA GGCCCGCGAA
CAATTCGGCC ACATTCTGGA CGCTTTCAGC TTCGGCGCTC CACCCCACGG AGGCCTTGCG
CTGGGCCTCG ACCGCCTGGT CATGATGATT TGCAACGCGG AATCCATCCG CGAAGTCATC
GCATTCCCGA AAAACAACCG GGGAGCGGAT CTGATGAGCG ACTCCCCCGC CGCCGCGGAA
GACCGTCAGC TGCGCGACAT TCACATTCAG GTGAAACTGC CCGCTAAAAA ATAG
 
Protein sequence
MNSYRTHTCS ELRAANIGKP TTLIGWVDSV RDHGGVIFID LRDRSGITQV VFHPEVNQDV 
AKASQQLRSE DMIQISGTVA ARLKTDTVDT TNADLPTGEI EVSADTLNVI NKADVLPFQL
DRALSNEDLR LKYRFLDLRR PTMARNMQIR HRVTKSTRDY LDEHGFLEIE TPILSKSTPE
GARDFLVPSR LAPGKFYALP QAPQQYKQLL MVAGMERYFQ IARCFRDEDL RADRQPEFTQ
VDIEASFITP EDIYNLVEGL LKRVYKESLG VDIPTPFPRM TWKEAMDQYG SDKPERRFGM
KLTDVSSIFE NSGFKVFASA VSNGGVVKAI NAKGFGSASV GQIDALTKTA VEAGAKGLAY
IKVREEDWRS PISKFLSDEE KQKLTEALDI ETGDLVLFAA GPWEPSCDIL GRVRLQCAEF
MELLKDNKER DFLWVIEFPL VGWDEEEQRW VAIHHPFTRP VKEDEQKLLS GELSADLRAQ
AYDVVLNGTE LGGGSIRIHE RDLQSAMFKA LGITEEQARE QFGHILDAFS FGAPPHGGLA
LGLDRLVMMI CNAESIREVI AFPKNNRGAD LMSDSPAAAE DRQLRDIHIQ VKLPAKK