| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amuc_1114 |
|---|
| Symbol | |
|---|
| ID | 6273960 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Akkermansia muciniphila ATCC BAA-835 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010655 |
|---|
| Strand | - |
|---|
| Start bp | 1328818 |
|---|
| End bp | 1332894 |
|---|
| Gene Length | 4077 bp |
|---|
| Protein Length | 1358 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 642613165 |
|---|
| Product | outer membrane autotransporter barrel domain protein |
|---|
| Protein accession | YP_001877721 |
|---|
| Protein GI | 187735609 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4625] Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain |
|---|
| TIGRFAM ID | [TIGR01376] Chlamydial polymorphic outer membrane protein repeat
[TIGR01414] outer membrane autotransporter barrel domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 75 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCTTC GTTTACCCCT CCCGTTGCGC CGGGCCCTTC TGGCAGCCAT GTGCGTCCTT
GGAAGCCAAA CCTTCGCCGC CGAATATACA GCTTCCACCC TGGAAGAATT TCAAACAGCC
TGGAACCAGA TGGCTGATGG AGACACGTTG ACCATTACCG GCTCCATCGA CTTTGAAGGA
GTAGAATTGG GCTCCCTGCC CGCAGACGCC TCCATTGTCC TCAAATCAGA CGGGAAAGGA
AGCATCTCCA ACTTCAACTA CAAGGACATG TCTGCCGTGA ACATGCAGCA TCTTAACGTG
AGCGGCCGTG GAACCGTTCA CGTGGGCAAC ATGACGGAAG GCATGCTCAG CGGATGGGAC
GAAGAAGGAA ACACCCTTTC CATAGAAAAC GCTTCCACGC TGGAAGGAAC CTGGCTTGTG
CTGGAAAACA ACAAGCTGGT GGCCGGAGAC GGAGCCGTTC TCAGCCGGAA TGAGGTCACT
ACCGGGCATT CCGCCTCCAT AGAAACCAGA ATTGATCCCG AAACAGGAGC CTTCATCTCC
ACGGTAGTCA CCTCTACACC GGGAGAAATT GCCATGGATC TGGGAAAAAA CGTCCGTATC
CATGAAATGG ATTTATCCAT GAATGATGGA GTCCGCGGCC AAATTGTCTC CCATGGAGAT
ATTTCCTTAT CTGATTCCAC GCTCATCTCT ACAGGCGCCG TCAATACGAC ATCCGTTTAT
GAAAATGAAG ATTCCGGCGT CCTGATCGGT CAGTCGGAAA CCGTCGGCGC TCACGGAGGG
ATCGACTTCA GCGCGGGAGC CGTGACGATG CAGGATACGA ACCTGAGCAC CGTGGGCGGC
GACAGCCAAT CCACTGGGGG TGAAATACTG CTGGGAGATA ACAGTACGCT GACAGCCAAG
GAGAGGGCGG AAATCACGAC AGAAGCCCTT GTCCTTTCCC AGGGCATTGC CAGACAAGAT
GAAGACGGAA CCTACCTTCC CGGAACCAGC ATGGAGGAAA CCATGGGGCT GTTCGGAGAC
ATCACCGTCG GCAACGGCAG TTCCATTGAA AACTATGACA TGGATGCGCA AGGTTCCATC
TTCATCGGCG AAGGGGCAAA ACTGACATCC GTCACACTGG ATGCCGTATC CGTGGAACTG
GATTCCCTGT CCATAACCGA AGGAGAAGAC GGAATCCGCA CCGTGCGCAT GACCACCGGA
GCGGGAGACC AGGCCACCGT CTCCATTGGA GCAAACTCTA CGCTGGACGA TGTTGATATT
TACGCGGAAG GAGGGAATAT CTATATCGGA AGCAATACTG AAATTACAGG CGACAACGAT
CTTTCCGGCA GCCAGATGGC CGATATCTGG GCAGGGGACA CAGTTGGCTC CATTGGAGAC
GACGGCGCTT CCACCCGTGG AACCGTCTCC TTTGAAGGGA CGATCAAGCA AAACGCGGAA
GGAGACTATG TGCTGGCCTC CGGAGAATAT GCGGAAGGGA CTTATGGCGG GAACGTAGTC
ATTGGAGACA ATGTTACGCT GACCATGACC ACCGTAGCTG CGGAAAATAC CATCACGCTG
GGGGACAATG TAACTTATCA GGGAACGGAA GATGCTCCCG TTTACCACAT GAGCGCCTTC
AGCGATGCGG ACAACAGCCT TATCCGCGCC AGCATCATTG ATACGGATGA AAACGGGAAT
ATTCTCAACG GAACAGTTAC CGTCACGGAA CGCGAAAACA AAATCACCAC GGGCCGCGGC
AATACATTCA TGAACAGCAA GGCCCCGGGC AGGTCCGCTG CCATGGATAT CTCCAGGGGA
GGCGCCCTCT ATGCACATGG AGACATCGTT ATTGGAGAAA ACAACAGCTT CATCAGCAAT
ACGGCAGCGG GATCCGGCGG AGCCGTCTTC GCCCAGAACA ATATTGCCGA ATCCATAACC
TATACGGACG GGGAACGCAC CTCCAAACTG ACCACGGAAG TGCTGGATAT CACGGTAGGA
AACGGAACTG TCTTCTCCGG CAACACGGCT GGAGCCAATG GCGGGGCCAT CGCTTCCGAA
CTGACGAGCA ACCTCGCGCA GCAGGATGGC GACAATGTGG AGGACCTCTT TGAAAATGAA
GGGGCCAATA TCTGGCTCGG CAGGGACGTC ACCTTCACGG ATAATGCCGC CTCCGGGCTG
GGAGGCGCCA TCCACCTGAT GGAGAACCGC ATTCTTCTGA TTGGCTCCGG AGCCTTCTTT
GACGGCAACA CGGCCGGGGA AGAAGCTAAC GACATCTTTG CGGAAGACGG CTCCGTCATT
CTGGCGGACA CGGACGCGAA CGATATCACC ATCATCAACA GCGGCATTTC CGACGCAGAC
TATTACTCCC TTGACGACGG TCCGTGGACG CGTGGCGCCG CCACGCTGAT TCAGGCAGGC
GGCGGCGACC TGCTTTACGG AGGCTCGGAC ACGGAGGATA ACGGATTCGG CGGAACATTG
ATCCAGCAAT CCGGAGCCGG CTCCCTGATC GTGGGCCACC TGGCCGAAGT GGATGACATC
ATGGTCATGG AAGGAGCTCA ATTGGGAGTT GAAGACCTGA CGGACTACGA AATGAATGGC
GCAGGCGTCA TTCTGACGGA AGATTCCGTA CTGGCTGGAG ACACGTTGGA AATTAACGGA
AACGCCGTGA TTGAAATGGG GGAAGGTTCC TCCCTGCTCC TCAATGACAT CGCGTTCAAC
GGCCACTCCT CCATCAAACT CTGGAATATC GATGAAGCGG GCAACGGCCG CGACCTCACA
CACACCGCCG CCGGAACTTC TTCCGTGGAC AACGTCACCA TCACCGGAGC CGAAGTAAGC
GAACTGCCTC TGTTCAACAC CGCTTTCGTC TCCACAAGCG CAACGCCCCA TGAAAACGGA
ACTATCCGCC TGACACAAAA TATGCACGGA GTCGCCGCCC CCATGCAGGG ATATTCCGGG
AACATATCCG GCGCAGCAGC CGGCATGGAA CAGGTCCGGA CGGGCGTCCG GGACGGTTCA
GCCGCACACA GGTTCTTCGA AACCCTTCTG GGAACCTCCA GCGCAGACGC GGCGGCAGCC
ATGATTCAAT CCGTCAGCGG GGAAACCGTG ATCAATGCGG CCTGGGCTTC CAACGATGCT
CTCAAGGGTT TTGCCGCCCT GGGCAGGACG CAGGGAGGCA TTTCCGCCGC ACAGGGACTG
AATATTACGG CAGCGAAGCC CGTCCAGTCT GCAGACGCCA AGGGTTCCCC CATCGCCATG
GCGCCGGTGG CTTCAGGCCG CGGCTCCGTA TGGGTGGGCG GCCTGGGTTC CTGGACGGAC
CAACATTCGC GCAGCGGCAT TGACGGCTAC AAATACGACG CAGGCGGCTA TGCCGTAGGC
GCGGATTGCA AGCTCTCCTC CTCCGTCCTG GCAGGAGTGG CCATCGGCCA ATCTTACGGA
ACTTTCCAGG ACAAGGGAGG ACTGTCCAGC TATGATGCGG ATTCTTTCAT GGCCATGCTC
TACGGCCGCT ACACGCCCGC CGGAACCTCC AAATTGTCTC TGGACGGGTA TGCAGCCTTC
GGAACCACAT CCTTTGACGG GAAAGCCCGC CTGGCGGACA CCTCCGCTGC CGGGAAATTT
GACTCTGACT CTTTCGGAGC CGCCATCTAC GCCACCTGGA CGGAACAATT CCGCAACAAA
CTGGTCATCG CACCATTTGC CGGGCTGGAA TTCATGACCG GGAAAACGGA CAGCTTCTCC
GAACACGGAG ACTTGGCCCG GACCTTCAGC GGAGCGCGCG CCCAGAACTG GACGCTGCCC
GTAGGCATCA CCCTCTCCCG CACCTACGCG GCAGGAACCA ATGCCACGCT GACGCCCAGC
GTGACAGTTG CCGTGACTCA GGATCTCAGC CGCCTCAATC CCAAAGGGAC TGTCAGCAGT
GACCTGGGCG CCTGGACGGC GCGCGGCGTC AACGTAGGCC GCACCGCTCT GCGCGTCAAC
GCAGGGATAA GCGCCGCCTT CGGCAACAGG TGGGGGGCCC GCATCGGATA CTCTCTGGAA
AGCAGGGCCG GACTGACGGC CCAGGGAATC AACGGCTCCG TCAGTTACTC ATTCTAA
|
|---|
| Protein sequence | MNLRLPLPLR RALLAAMCVL GSQTFAAEYT ASTLEEFQTA WNQMADGDTL TITGSIDFEG
VELGSLPADA SIVLKSDGKG SISNFNYKDM SAVNMQHLNV SGRGTVHVGN MTEGMLSGWD
EEGNTLSIEN ASTLEGTWLV LENNKLVAGD GAVLSRNEVT TGHSASIETR IDPETGAFIS
TVVTSTPGEI AMDLGKNVRI HEMDLSMNDG VRGQIVSHGD ISLSDSTLIS TGAVNTTSVY
ENEDSGVLIG QSETVGAHGG IDFSAGAVTM QDTNLSTVGG DSQSTGGEIL LGDNSTLTAK
ERAEITTEAL VLSQGIARQD EDGTYLPGTS MEETMGLFGD ITVGNGSSIE NYDMDAQGSI
FIGEGAKLTS VTLDAVSVEL DSLSITEGED GIRTVRMTTG AGDQATVSIG ANSTLDDVDI
YAEGGNIYIG SNTEITGDND LSGSQMADIW AGDTVGSIGD DGASTRGTVS FEGTIKQNAE
GDYVLASGEY AEGTYGGNVV IGDNVTLTMT TVAAENTITL GDNVTYQGTE DAPVYHMSAF
SDADNSLIRA SIIDTDENGN ILNGTVTVTE RENKITTGRG NTFMNSKAPG RSAAMDISRG
GALYAHGDIV IGENNSFISN TAAGSGGAVF AQNNIAESIT YTDGERTSKL TTEVLDITVG
NGTVFSGNTA GANGGAIASE LTSNLAQQDG DNVEDLFENE GANIWLGRDV TFTDNAASGL
GGAIHLMENR ILLIGSGAFF DGNTAGEEAN DIFAEDGSVI LADTDANDIT IINSGISDAD
YYSLDDGPWT RGAATLIQAG GGDLLYGGSD TEDNGFGGTL IQQSGAGSLI VGHLAEVDDI
MVMEGAQLGV EDLTDYEMNG AGVILTEDSV LAGDTLEING NAVIEMGEGS SLLLNDIAFN
GHSSIKLWNI DEAGNGRDLT HTAAGTSSVD NVTITGAEVS ELPLFNTAFV STSATPHENG
TIRLTQNMHG VAAPMQGYSG NISGAAAGME QVRTGVRDGS AAHRFFETLL GTSSADAAAA
MIQSVSGETV INAAWASNDA LKGFAALGRT QGGISAAQGL NITAAKPVQS ADAKGSPIAM
APVASGRGSV WVGGLGSWTD QHSRSGIDGY KYDAGGYAVG ADCKLSSSVL AGVAIGQSYG
TFQDKGGLSS YDADSFMAML YGRYTPAGTS KLSLDGYAAF GTTSFDGKAR LADTSAAGKF
DSDSFGAAIY ATWTEQFRNK LVIAPFAGLE FMTGKTDSFS EHGDLARTFS GARAQNWTLP
VGITLSRTYA AGTNATLTPS VTVAVTQDLS RLNPKGTVSS DLGAWTARGV NVGRTALRVN
AGISAAFGNR WGARIGYSLE SRAGLTAQGI NGSVSYSF
|
|---|
| |