| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amuc_1096 |
|---|
| Symbol | |
|---|
| ID | 6274005 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Akkermansia muciniphila ATCC BAA-835 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010655 |
|---|
| Strand | - |
|---|
| Start bp | 1308450 |
|---|
| End bp | 1309874 |
|---|
| Gene Length | 1425 bp |
|---|
| Protein Length | 474 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 642613147 |
|---|
| Product | transcription termination factor Rho |
|---|
| Protein accession | YP_001877703 |
|---|
| Protein GI | 187735591 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1158] Transcription termination factor |
|---|
| TIGRFAM ID | [TIGR00767] transcription termination factor Rho |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.00000220234 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.0000128314 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACTGAAG AACTCGACAA CACCCCTTCC CCCGCCGGAG ATATTCCGCA GGAAACCCTC
CCCAAGCCCC TGCCCGCGCC GGAAGAAACC GCCGGGGAAC AGCCGGCTGC CGCTCCGGAG
GAAAATAGAG GAAACGCAGT CCGGGAGGAG GAGGAAGCAG CCCCTGTTCT GGAGCAGATT
GACATCAATG AACTGCGGAA ACGCCCCCTG AACGATCTTC AGGAAATGGC GGAAGGGCTG
CCCATCCGGA ACGCGGCCTC CCTCACCAAG TCCCAGCTGG TTTTTGAATT GGGGAAACAG
CTTCTGGCAA AGGGCCATGA AGTCGTAGTT TCCGGGGTCA TGGAACAAGC CAAGGATAAT
TACGCCATGC TGAGGGATCC GGTGAAAAGT TTCCGCACCT CTCCGGATGA TATTTATCTG
GGCGGCAATC TCATCAAACC CCTGCATCTC CGCGTAGGCC AGCAGATCAA GGTCAGGCTG
CGCAAATTGC GGCCTCATGA CAAGTACCTT TCTGCAGCCT CCGTCATCAG CGTGGAGGAC
ATCCCTGCGG AAGACTACCG GGCGCGCAGC GATTTTGAAC GCCTCACCCC CCTCTTCCCC
AAGGAACGCC TCCTTCTGGA AAACAAGGGG GTCAATTCCG CCGCCATGCG CGTGCTGGAC
CTCATGACGC CCTTCGGCAA AGGGCAGCGC GGCCTGATTG TGGCCCCCCC GCGCGGAGGA
AAAACCGTTC TTCTGAAAAC AATCGCCCGT TCCATCAGGG CCAATTATCC GGAAGTGGAA
CTGATTGTGC TGTTGCTGGA CGAACGTCCG GAGGAAGTAA CGGATTTTGA AGAAACCGTG
GATGCTCCGG TATTCGCCTC CACTTTTGAC GAACCTTCCC GGCGCCATGC CCAGGTTTCC
GATCTGGTTA TCGAACGGGC CAAACGCCTG GTGGAAATGG GCAGAGACGT CGTCATCCTG
CTGGATTCCC TCACCAGGCT GGCCCGCGGC TACAATGCCA ACCAGACGGG AGGACGCATC
ATGTCCGGCG GCCTGGGGTC CAATGCATTG GAAAAACCGC GCAAATTCTT TTCCGCGGCG
CGCAATGTGG AAGAAGGAGG CAGCCTGACC ATCATCGCCA CATGCCTGGT AGACACGGAA
TCAAGAATGG ACGAAGTGAT TTTTGAAGAA TTCAAGGGAA CGGGCAATCT GGAAATCCGC
CTGGACCGGG AACTTTCCGA ACGGCGCATT TATCCGGCCA TTTCCCTTTC CCAGAGCGGC
ACCCGCAATG ACGACAGGCT GTATAACGAA CAGGAATTCG TCAAAATCAT GCAATTGCGC
CGCCAGCTCG CCATGAAACC GGGCTGGGAA GGCCTTCAGA CTCTCCTGCA AAATATCTCC
AAGACACAGA ATAACGCGGA ACTTCTGCTG ACGGGGCTGC GGTAA
|
|---|
| Protein sequence | MTEELDNTPS PAGDIPQETL PKPLPAPEET AGEQPAAAPE ENRGNAVREE EEAAPVLEQI
DINELRKRPL NDLQEMAEGL PIRNAASLTK SQLVFELGKQ LLAKGHEVVV SGVMEQAKDN
YAMLRDPVKS FRTSPDDIYL GGNLIKPLHL RVGQQIKVRL RKLRPHDKYL SAASVISVED
IPAEDYRARS DFERLTPLFP KERLLLENKG VNSAAMRVLD LMTPFGKGQR GLIVAPPRGG
KTVLLKTIAR SIRANYPEVE LIVLLLDERP EEVTDFEETV DAPVFASTFD EPSRRHAQVS
DLVIERAKRL VEMGRDVVIL LDSLTRLARG YNANQTGGRI MSGGLGSNAL EKPRKFFSAA
RNVEEGGSLT IIATCLVDTE SRMDEVIFEE FKGTGNLEIR LDRELSERRI YPAISLSQSG
TRNDDRLYNE QEFVKIMQLR RQLAMKPGWE GLQTLLQNIS KTQNNAELLL TGLR
|
|---|
| |