| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amuc_1041 |
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| Symbol | rpoB |
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| ID | 6274072 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Akkermansia muciniphila ATCC BAA-835 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010655 |
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| Strand | - |
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| Start bp | 1242515 |
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| End bp | 1246453 |
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| Gene Length | 3939 bp |
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| Protein Length | 1312 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 642613090 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_001877648 |
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| Protein GI | 187735536 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 65 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCAAAGC GACTCTACTT CGGGAATATC AAGGAAGTCA TCGAACCTCC GAACCTTATT
GAGATTCAAC TTCAATCATA CTTCGATTTT CTACAACAGG ACACGCCGGC CGCGGCCAGG
AAAAACATCG GGTTACAAGG CGTTCTGAAG GAAATCTTTC CTATCAAGAG CTATGACGAA
AACATTGAGC TCGACTTCGT CTCCTATGAC ATTGAACAGC CGAAGATGAG CGATTACGAG
GCCATCCGCG CGGGGGAAAC CTACAGCGCC GCCCTTCAGG TCACCTTCAA GCTCAAATCC
GACAACGAGT CCAAGGAAGA AACGGTCTAT ATGGGAGAAC TCCCTATGAT GACCAACCGC
GGCACCTTTG TCATTAACGG CGCCGAACGC GTCATTGTGT CCCAGCTGCA CCGTTCCCCG
GGCATTTGCT TTGAAAGCGC CCAGCATCTG AACGGAAAAC TGCTCCACTC CTTCCGCATC
ATCCCGGACC GGGGCTCCTG GCTGGAGGTC CAGTTTGACA CCAACGACCT GCTTTACGTT
TACCTTGACC GCCGCCGCCG CCGCCGCAAA TTCCTTGCGA CGACGTTTAT GCGCTACCTG
GGCTTCAAAA CGGACCGTGA CATCGTCAGC CAGTTCTACA ACATCCGCAC GCTTCCCCTG
AGCGAAGACA TGACGGAAGA AGATCTGCAC AACCTTGTGG CTGTGGACAC GATCAAGGAC
AAGGACCTGG TTCTTGCCAA GGCTTTCGAA CAGCTCAATA TGGGTGTGGT TCGCCAGCTC
CTCCAGTTCG GCATCAAGAA AATCGACGTC ATTGACCAGA GCGAGGACGA CGTGCTGATC
AAAACCCTGA AGAAGGATCC CGCTCACGAC GAAGAATCCG CCCTCAAGGA AATCTACAAA
CGCCTGCGTC CCGGAGATCC CGCTACTGCC GCTCAGGCAC GCACCCTGCT TAAGAGGCTT
TTTGACGATC CCAAGAAATA CGACCTCACC CGCGTGGGGC GCTACAAAAT CAACCAGAAA
CTCGGGCTGG ACACCAGCCT GGACCAGCGC CTGATGACGG CGGAAGATTT CCTGGCCGCC
CTCAAATACC TCCTGCGCCT CAAGAAGGGC GAAGGCATGG TGGACGACAT CGACCACCTG
GGCAGCCGCC GCGTACGTGC CGTAGGCGAA CTCATGGCCA ATCAATGCCG CGTAGGCCTT
GCCCGCACCG AGCGCTTGGT CAAGGAACGC ATGACCCTCA TTGACCAGAA CATTGAAGGC
GTCACGCCCA GCAAACTCAT CAATCCGAAG GCCCTCAGCG CCGTCGTGCG CGACTTCTTC
GGCCGCTCCC AGCTCTCCCA ATTCATGGAC CAGATCAACC CCCTCGCGGA ATTGACGCAC
AAGCGCCGTC TTTCCGCCCT GGGGCCCGGC GGCCTGAACC GTGACCGGGC CGGATTTGAA
GTCCGGGACG TACACCCCTC CCACTACGGG CGCATTTGCC CCATTGAAAC GCCGGAAGGT
CCCAACATCG GCCTGATCAA CTCCATGTGT ACCTACGCCC GCATCAATGA ATTCGGATTC
ATTGAAACAC CTTACCGCAA GGTGGAAAAC GGCAGGGTCA CCAATACCAT CGAATACGTC
ACCGCCGATC AGGAAGAAGG CTATCTCATC GCCCAGGCCA ATAACCCGCT GGACGAACAG
GGCAACTTCA CGACCTCCCG CGTAACCGCC CGTGAAAAAG GCGAATTCAT CGAAGTGGAT
CCGGCAGACG TGCATTACAT GGACGTTTCT CCCAAGCAGC TCGTTTCTAT CGCCGCCGGT
CTTATCCCCT TCCTGGAACA TGACGACGCC AACCGCGCCC TGATGGGCTC CAACATGCAG
CGCCAGGGCG TGCCTCTGAT GGTAGCGGAA TCTCCATACG TGGGAACCGG CATCGAAGGA
AAGTGCGCCA GGGACTCCCG TTCCGTCGTT CTGGCGGAAG CGGACGGCAT CGTGGCCTCC
GCCACGGCTG AAGTCATTAT CACCACGAAA GACGGGGAAC TGCCCGTGCG TCCGGAAGTA
TTCCTGTCCG ATCCCGACAG TGTGCGCACG GACCGCGACA ATGGCGTTTA CGTCTATCCC
CTGCGCAAGT TCATGCGTTC CAATGCTGGA ACCTGCATCA ACCAGCGTCC GATCGTGCGC
CGCGGCGACA AAATCAAAAC CGGCGACGTG CTGGCGGACG GCCCGAACAC GGACCAGGGC
GAACTGGCCC TCGGCCGCAA TGTTCTGGTG GCCTATATGC CGTGGAACGG TTACAACTTC
GAAGACGCTA TTGTCATCTC CGAAAAAACC GTGAAGGAAG ACACCTTCAC TTCCATTCAT
ATCTCCGAGT TTGAAGTTCA GGCCCGTGAC ACCAAGCTGG GTCCGGAAGA AATCACCCGT
GATATCCCGA ACGCCGGTGA TGAAGCCCTG AAAAACCTGG ATCATGACGG CGTCATCCGC
ATCGGCGCGG AAGTGAAGCC CGGCGACATC CTCGTCGGCA AAATCACCCC CAAATCGGAA
ACGGAACTGG CTCCGGAAGA ACGTCTCCTC CGCGCCATTT TCGGTGAAAA GGCCGCAGAA
GTGAAAGATA CCTCACTCCG TGTCCCCTCC GGCTGCACCG GCATCGTGAT GGATGTGCGC
ATTTCTTCCA CAGGCTCCGG CCACCACCGC GGCGACCTCG TCGTAGACAG CGCGGAAAAG
AAAAAGCAGT TCAAGAAAAT CAACGACGAA CATAAAAAGA AGAAGGAGCA GCTCATTGAC
CAGTTGACCA AGAAGCTCTC CGATATTCTT CTGGGTGAAA AAATCCCGCT GGACGTCGTC
AATGAACAGA CCGGTGAAAT CATCATCCCG GCCAACAGGA AAATCACCAA GACCCTGTTG
CGTAAACTGG CCCTGGTTCA CGACCACATC GAAATCGAAC CCAGCCCGAT TCGCAACAAG
ATTCTGGAAA TCATCACTTC GTTTGAAGGC CGCTTTACGG AACTGGATGA CGAACGGGAA
CACAGGCTGG ATCAGATGGA ATCCGGGGAC GAATCCGAAC CCGGCGGACT GAAGGAAGTT
AAAGTATATA TCGCCGCCAA GCGCAAGCTC GGCGTGGGTG ACAAGATGGC CGGTCGCCAC
GGCAACAAAG GCGTCGTTGC CAAAATCGTC CCGGAACAGG ATATGCCCTT CCTCGCGGAC
GGTACTCCGG TGGATATCGT TCTGAACCCC TTGGGCGTGC CTTCCCGAAT GAATGTGGGG
CAGGTGCTTG AAGCCCACCT CGGCATCGCT GCCAGGGCCC TTGGCTTCAA GGTGGCTACC
CCGGTGTTCG ACGGGATCAG TGAAGAAACC ATCTGGAATT ACATGTCCGA AGCCAAGAAG
GTGGACGGTT TCACCTGGAT CGGTGACGGC AAGGACGGCA CCGTGGGAGG GAAGAGTACC
CTTTATGACG GCCTGACCGG CGAACCTTTC CATAACCCGG TGGTGGTAGG CCAGACCTAC
ATGCTCAAAC TGAACCACCT GGTGGCGGAC AAGATTCACG CCCGCGCCGT GGGTCCGTAC
AGCCTGGTCA CGCAGCAGCC TCTGGGCGGC AAGGCCCAAT ACGGCGGTCA GCGTTTCGGG
GAAATGGAAG TGTGGGCACT GGAAGCCTAT GGCGCCGCCT ATACCCTCCA GGAACTTCTC
ACCGTCAAGT CCGACGACGT TCAGGGCCGT ACCCGCATTT ACGAATCCAT CGTGAAGGGG
GATAATACCC TGGAAGCCGG AACTCCGGAA TCTTTCAACG TTCTGATGAA GGAAATGCAG
TCCCTGGGGC TGAACGTACG CCCCGGCAGC AAGGATGAAC AACCCTCCCT GCAACTCGGC
GGCACGGATC TCACTCCCGT GGACGGCATG ACGGAAGGCT TTGACAGCGA CGACATGGCC
GGCCTGGCGG ACGTCGACTT CTCCGACCTC AAATTCTAA
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| Protein sequence | MSKRLYFGNI KEVIEPPNLI EIQLQSYFDF LQQDTPAAAR KNIGLQGVLK EIFPIKSYDE
NIELDFVSYD IEQPKMSDYE AIRAGETYSA ALQVTFKLKS DNESKEETVY MGELPMMTNR
GTFVINGAER VIVSQLHRSP GICFESAQHL NGKLLHSFRI IPDRGSWLEV QFDTNDLLYV
YLDRRRRRRK FLATTFMRYL GFKTDRDIVS QFYNIRTLPL SEDMTEEDLH NLVAVDTIKD
KDLVLAKAFE QLNMGVVRQL LQFGIKKIDV IDQSEDDVLI KTLKKDPAHD EESALKEIYK
RLRPGDPATA AQARTLLKRL FDDPKKYDLT RVGRYKINQK LGLDTSLDQR LMTAEDFLAA
LKYLLRLKKG EGMVDDIDHL GSRRVRAVGE LMANQCRVGL ARTERLVKER MTLIDQNIEG
VTPSKLINPK ALSAVVRDFF GRSQLSQFMD QINPLAELTH KRRLSALGPG GLNRDRAGFE
VRDVHPSHYG RICPIETPEG PNIGLINSMC TYARINEFGF IETPYRKVEN GRVTNTIEYV
TADQEEGYLI AQANNPLDEQ GNFTTSRVTA REKGEFIEVD PADVHYMDVS PKQLVSIAAG
LIPFLEHDDA NRALMGSNMQ RQGVPLMVAE SPYVGTGIEG KCARDSRSVV LAEADGIVAS
ATAEVIITTK DGELPVRPEV FLSDPDSVRT DRDNGVYVYP LRKFMRSNAG TCINQRPIVR
RGDKIKTGDV LADGPNTDQG ELALGRNVLV AYMPWNGYNF EDAIVISEKT VKEDTFTSIH
ISEFEVQARD TKLGPEEITR DIPNAGDEAL KNLDHDGVIR IGAEVKPGDI LVGKITPKSE
TELAPEERLL RAIFGEKAAE VKDTSLRVPS GCTGIVMDVR ISSTGSGHHR GDLVVDSAEK
KKQFKKINDE HKKKKEQLID QLTKKLSDIL LGEKIPLDVV NEQTGEIIIP ANRKITKTLL
RKLALVHDHI EIEPSPIRNK ILEIITSFEG RFTELDDERE HRLDQMESGD ESEPGGLKEV
KVYIAAKRKL GVGDKMAGRH GNKGVVAKIV PEQDMPFLAD GTPVDIVLNP LGVPSRMNVG
QVLEAHLGIA ARALGFKVAT PVFDGISEET IWNYMSEAKK VDGFTWIGDG KDGTVGGKST
LYDGLTGEPF HNPVVVGQTY MLKLNHLVAD KIHARAVGPY SLVTQQPLGG KAQYGGQRFG
EMEVWALEAY GAAYTLQELL TVKSDDVQGR TRIYESIVKG DNTLEAGTPE SFNVLMKEMQ
SLGLNVRPGS KDEQPSLQLG GTDLTPVDGM TEGFDSDDMA GLADVDFSDL KF
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