| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amuc_0392 |
|---|
| Symbol | |
|---|
| ID | 6274841 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Akkermansia muciniphila ATCC BAA-835 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010655 |
|---|
| Strand | + |
|---|
| Start bp | 473409 |
|---|
| End bp | 475538 |
|---|
| Gene Length | 2130 bp |
|---|
| Protein Length | 709 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 642612443 |
|---|
| Product | coagulation factor 5/8 type domain protein |
|---|
| Protein accession | YP_001877012 |
|---|
| Protein GI | 187734900 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3669] Alpha-L-fucosidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 70 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGAAG GGAGGAGCGA TTTTCGTATT TTTCAACACA CTTTTTTCCG CATGAACAAA
CTAACCACAC TCTTCCTCGG AACGGTTCTC TCTTCCTCCA TGCTGCCCGG CTGGACCGCA
GCACCACCCA AACCATACGG CGCGATTCCA ACACCCGCCC AAATCAACTG GCAGCGCATG
GAATTCTACG GCTTCATCCA CTTTGGCCTG AATACGTTCA CGGGACGGGA GTGGGGTTAC
GGCGATGAAG ACCCGAAAAT TTTCAACCCC ACGGATTTCA ATGCCTCCGA TATCGTCTCC
ACCTTTAAAA AAGGCGGAAT GAAAGGAATG ATTTACACGG CCAAACATCA TGACGGCTTC
TGCGCCTGGC CCACCAAATC CACGGACCAC AACATCACCA AGAGCCCTTG GAAAAACGGA
AAAGGAGATG TAGTCCGGGA ATTCGCCCTT GCCTGCAAAA AGCACGGCAT CAAATTCGGC
ACCTACCTCA GCCCCTGGGA CCGCAACAAC GCGGATTACG GCAAGGATGG CTACCTGGAC
GTTTACTATA AACAAATCCG GGAACTGCTG ACCAATTACG GGCCTGTCTT TGAAATCTGG
TTTGACGGAG CCAACGGAGG AGATGGCTAT TACGGAGGAG CCAGGGAAAA GCGCAATATC
GGTGACGCGG AAAAATACTA CAACTTTGAA AAAATCGTGG AAATGATCCG CAAAATCCAG
CCCAGCTGCA TCATCTGGGG AGCGGGCCAC TACGGAGACG CCCGCTGGGG AGGCTCCGAA
AAAGGCCACG TCAATTATCC CCATTGGAGC ACTGTAGGGC TGAACGGCGG GGGCGGAGGC
ACCGGAAAAC GCGGCGGAGA ACGCTGGGTG CCTGCGGAAG GAGACACCAC CATCAACCAT
GCCGGCTGGT TCTGGCACCA GGGACAGGCA TCCCGCGTCA AATCCCCTGA AGAACTTATG
CAGGTATGGT TTGATTCCGT AGGCCGCGGG GCCAACCTCA TTCTGAACGT GGCGGCGGAC
AAAACGGGCA GACTGGATCC TGCGGATGTC AAATCCCTGC TGGAATTCAA AGAACTGCGC
GACAAGCTAT ATGCCAGGGA CTACGCGTTG GGAGCAACCG TCACAGCCAG CCAGACGCGC
GGCAACGACA AAAAATTCTC GCCCTCCAAC ATGACGGACG GCAACATTGA AACTTACTGG
GCCGTGGAAG ATGACAACCT GACCCCCACC GCCGTTATTA CGCTGCCCAA ACCCGCCACT
TTCGACGTCA TCCGGCTGCG CGAACAAACA CGTCTGGGAC AACGCGTGGA CTCCTTCAAT
ATTGACGCTT TCGTCAATGG CAAATGGGTT TGTATCGACA ATGAAGGGAA AACCATCGGC
AACCAGGTCA TGCGCCGCCT GAACCGCCCC ATCACTACCC AGAAACTGCG CCTGCGCATC
ACGGGCAGCC AGGCCACTCC CTGCATCTCG GAATTCTCCC TCTTCCGCCA GCCTGCGGGC
GCCGTGCGGC CCTCCATCTT CCGCCGCGGA GACAACCTCG TCATCATTGC GGACGGCAAA
AATAAAATCC TGTACACGAC GGACGGCAGC GAACCCAAAG CAGGATCTCC CGTTTACAGC
CAGGGTGCTA AATTTACGGA AAGCGGCATT GTCAAGGCTC GCTGCCAATT CTCCAATGGT
AAATTGGGCC CTGTCAGCCA GGCCAAATTC GGCATCAGCA AAACCGGATG GAAAGTGAAA
ACCGCCACAT CCGGGAATGC GGCGGCGGCC ATAGACGACA ATCCGGAAAC CTCATGGCTT
GCCAAGGCGG AAGCGCCTCA ATCCTTTGTG GTGGATATGG GAAAACCGTA CCAGGTTTCC
AGCTTCTCCT ACCTGCCCAG ACAGGATGGA AAAACCTCCG GCATGACGGA TAAATACCAA
TTTGAAGTAA GCGCGGATGG GAAAAACTGG ACGAAAGTGG CGGAAGGGGA ATTCTCCAAC
CTGCGCGCTA ACCCCATTGA GCAATCCGTT AATCTCAAAA ACATGAACGG ACCTGTGCGT
TACTTCCGCT TCATCGGCAC CAGTTCTCTG GACGGCAACA GCGCTTCCGC TGCGGAAATA
AACGTTTTCG GCACTCCCGC AGGCAAATAA
|
|---|
| Protein sequence | MKEGRSDFRI FQHTFFRMNK LTTLFLGTVL SSSMLPGWTA APPKPYGAIP TPAQINWQRM
EFYGFIHFGL NTFTGREWGY GDEDPKIFNP TDFNASDIVS TFKKGGMKGM IYTAKHHDGF
CAWPTKSTDH NITKSPWKNG KGDVVREFAL ACKKHGIKFG TYLSPWDRNN ADYGKDGYLD
VYYKQIRELL TNYGPVFEIW FDGANGGDGY YGGAREKRNI GDAEKYYNFE KIVEMIRKIQ
PSCIIWGAGH YGDARWGGSE KGHVNYPHWS TVGLNGGGGG TGKRGGERWV PAEGDTTINH
AGWFWHQGQA SRVKSPEELM QVWFDSVGRG ANLILNVAAD KTGRLDPADV KSLLEFKELR
DKLYARDYAL GATVTASQTR GNDKKFSPSN MTDGNIETYW AVEDDNLTPT AVITLPKPAT
FDVIRLREQT RLGQRVDSFN IDAFVNGKWV CIDNEGKTIG NQVMRRLNRP ITTQKLRLRI
TGSQATPCIS EFSLFRQPAG AVRPSIFRRG DNLVIIADGK NKILYTTDGS EPKAGSPVYS
QGAKFTESGI VKARCQFSNG KLGPVSQAKF GISKTGWKVK TATSGNAAAA IDDNPETSWL
AKAEAPQSFV VDMGKPYQVS SFSYLPRQDG KTSGMTDKYQ FEVSADGKNW TKVAEGEFSN
LRANPIEQSV NLKNMNGPVR YFRFIGTSSL DGNSASAAEI NVFGTPAGK
|
|---|
| |