Gene Amuc_0320 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAmuc_0320 
Symbol 
ID6275046 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAkkermansia muciniphila ATCC BAA-835 
KingdomBacteria 
Replicon accessionNC_010655 
Strand
Start bp377478 
End bp378446 
Gene Length969 bp 
Protein Length322 aa 
Translation table11 
GC content61% 
IMG OID642612374 
Productoligopeptide/dipeptide ABC transporter, ATPase subunit 
Protein accessionYP_001876943 
Protein GI187734831 
COG category[E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism 
COG ID[COG0444] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones49 
Fosmid unclonability p-value0.173398 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTCTCCG TCAGGAACCT CAGCGCCTCC TTCCACACCA GGGCCGGCAT TGTCCGGGCG 
GTAAGGAACG TGTCCTTTGA TGTAGCCCCG GGGGAAACGC TTGGCATCGT GGGTGAATCC
GGATCAGGAA AATCCGTCAC CTGCTACTCC ATGATGGGGC TCATTCCGAT GCCTCCGGGC
CGCATTGAAA GCGGTTCCGC CATGCTGAAC GGCACGGATC TGCTCCGTTG CCCGGAAAAG
AAACTCCGGG CCATCCGCGG CAAACGCATC TCCATGATCT TCCAGGACCC CATGACCTCC
CTCAACCCGT ACCTGACCAT CGGGGAGCAG GTGGCGGAAC CCCTTGTCAT TCACGAAGGG
GCCGGCAAAA AGGAAGCGCG GGCACGCGCG CTGGAACAGC TTGCCCTGGC AGGCATACCG
GATGCGGAAC AGCGCATGGA CGCATATCCC CACCAATTCT CCGGCGGCAT GCGCCAGCGC
GTGATGATTG CCATGGCCCT CATCACCAGG CCGGAAATAC TCATCGCGGA TGAACCCACC
ACCGCCCTTG ACGTCACTGT CCAGAAGCAG GTGCTGGATC TCATCAGAAA ACTTCAGCAG
GACATGGGCA CCTCCGTCAT CCTCATCACA CATGACCTCG GCGTGGTGCG CCAATACGCG
GACCGCATCA ATGTCATGTA TGCAGGCCGC ATCGTGGAAA GCGCCCCGGC GAAGGAACTT
CTGGAACATC CCCGGCATGC CTACACCAGA GCCCTGATGA AATCCATTCC CGGGCTGCAT
GCGAAAGGCG CCCCCCTCTA TACCATTCCC GGACTGCCTC CCAACATGAC TCAGGAGCCA
TGCGGATGCA GCTTCCGCCC CAGGAACACC CTCGGAAACC CGGCACTCTG CCTCACGGAC
CGGGAACCGG AGCTGGTGGA AATATCTCCG GGGCACTCAG TCCAGAATTG TCCGGGCTGC
CTAGCTTAG
 
Protein sequence
MLSVRNLSAS FHTRAGIVRA VRNVSFDVAP GETLGIVGES GSGKSVTCYS MMGLIPMPPG 
RIESGSAMLN GTDLLRCPEK KLRAIRGKRI SMIFQDPMTS LNPYLTIGEQ VAEPLVIHEG
AGKKEARARA LEQLALAGIP DAEQRMDAYP HQFSGGMRQR VMIAMALITR PEILIADEPT
TALDVTVQKQ VLDLIRKLQQ DMGTSVILIT HDLGVVRQYA DRINVMYAGR IVESAPAKEL
LEHPRHAYTR ALMKSIPGLH AKGAPLYTIP GLPPNMTQEP CGCSFRPRNT LGNPALCLTD
REPELVEISP GHSVQNCPGC LA