| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amuc_0055 |
|---|
| Symbol | |
|---|
| ID | 6275110 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Akkermansia muciniphila ATCC BAA-835 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010655 |
|---|
| Strand | + |
|---|
| Start bp | 74621 |
|---|
| End bp | 75421 |
|---|
| Gene Length | 801 bp |
|---|
| Protein Length | 266 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 642612098 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_001876682 |
|---|
| Protein GI | 187734570 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1121] ABC-type Mn/Zn transport systems, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.00561374 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 44 |
|---|
| Fosmid unclonability p-value | 0.0686631 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACAGCC CAGCCCCTCC CTGCACCCAG GACCACATCT GCTGGGGCGC GCACGCCAGC
CACCCGGACC GCCACCGACT GGAAGTGGAC AGCCTCAGCG TTTATTATGG AAGCCTTCTC
GCGCTCAACG GCATCAGCTT TTCCATCACC TGCGGCCACA CGCTGGCTCT GATGGGTCCC
AACGGTGCAG GAAAATCCAC GCTGATCAAG GCTCTGGCCG GGCTGATCCG CCCCGATTCC
GGAAAAATCC TGTGGAACGG ATGCCCCCTG CACGACACGC CGGGAGAAAT AGCCTACCTG
CCCCAGCGTT CCGACGTAGA CTGGTCTTTC CCCATCACCG TCCGCGCGCT GGTGGAAATG
GGCCGCTATC CGTCCCTGGG CCTGTGGAAA AAATTCGGGA GGCATGACCG GGATATTGTG
GAAAAATCCC TTCACGTTCT TGGTATGGAA TCCCTGGCGG ACCGCCAGAT TTCAGAACTC
TCCGGCGGCC AGCAGCAGCG GGCCTTTCTG GCTCGGGCCC TGGCGCAGGA GGCCCATGTC
CTCCTGCTGG ACGAACCCTT CACGGGCCTG GACGCCCCCG CCAGCCAATC CCTGGGGAGG
CTACTGGATT CCCTGTCGGC GGAAGGGCGG CTGGTCATCG CCTCCCACCA CGACCTGAAC
ACGGCGGCAG ACATCTTCGA CACCATCCTG CTGATGAACA GGGAGCTGGC CGCCTTCGGC
CCCCCGAAGG AAGTGCTTAC CCCCGCACGC ATCCGGGAGA CATACGGAAT GGAACCTCAA
CCGGAAACCC AAGCTTCATG A
|
|---|
| Protein sequence | MNSPAPPCTQ DHICWGAHAS HPDRHRLEVD SLSVYYGSLL ALNGISFSIT CGHTLALMGP
NGAGKSTLIK ALAGLIRPDS GKILWNGCPL HDTPGEIAYL PQRSDVDWSF PITVRALVEM
GRYPSLGLWK KFGRHDRDIV EKSLHVLGME SLADRQISEL SGGQQQRAFL ARALAQEAHV
LLLDEPFTGL DAPASQSLGR LLDSLSAEGR LVIASHHDLN TAADIFDTIL LMNRELAAFG
PPKEVLTPAR IRETYGMEPQ PETQAS
|
|---|
| |