Gene Amuc_0041 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAmuc_0041 
Symbol 
ID6275158 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAkkermansia muciniphila ATCC BAA-835 
KingdomBacteria 
Replicon accessionNC_010655 
Strand
Start bp57297 
End bp58373 
Gene Length1077 bp 
Protein Length358 aa 
Translation table11 
GC content58% 
IMG OID642612083 
Productpeptide chain release factor 1 
Protein accessionYP_001876669 
Protein GI187734557 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0216] Protein chain release factor A 
TIGRFAM ID[TIGR00019] peptide chain release factor 1 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones49 
Fosmid unclonability p-value0.334875 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATTACA CACCTCTCAT TGAAAAACGC CGCCAGCGCC TTGAAGAATT GGAAACAGTC 
ATTGCCGAAC CGGACTTCTT CAATGACCAG AAAAAGGCCT CGGAAATCAT GAGAGAGCAC
CGCCGCCTGA AGGAACTCAT GGAAACATGG GATTCCCTGA ACGCCACGGA ACAACAGCTG
GCGGACAACC AGGAACTGGC CAAGACGGAC GATCCGGAAT TAGCGGAACT GGCCGCCCTG
GAGATTCCAG AACTGGAAGC CGCCCTGGAA AAACTGCGGA GCGACGTGCA GTACAGCCTG
CTACCCCGCG ACACGACGGA AGACCGGGAC GCCATCATTG AAATCCGCGC CGGAACGGGC
GGGGATGAAG CCTCCCTGTT TGCCGGAGAC CTGCTGCGGA TGTACCAGCG TTTTGCGGAA
GAACGCGGCT GGCGCTTCGA GCATCTGGAA AGCAGCCCGT CGGACGTGGG CGGATTCAAG
GAAGTCGTCT GCCGCATTGC CGGGGAAGAA GTGTTCCGCT TCCTGAAATA TGAAGGCGGC
GTGCACCGTG TGCAGCGCGT TCCCGCTACG GAAACGCAGG GGCGCATCCA TACTTCCACC
GCCACCGTGG CCGTCATGCC GGAAGCGGAG GAAGTGGACA TAGAAATCCG CCCGGAAGAT
CTCCGCATCG AAGTATGCCG TTCCGGCGGA GCCGGAGGCC AGCATGTGAA CAAAACGGAA
TCCGCCGTTC AGATATGGCA CATACCCACG GGCGTTTATG TCCGGTGCGA GGAAGAGCGC
AGCCAGATGA AAAACCGAGA AAAAGGCATG AAAATCCTGC GCGCCAAGCT CTTTGAAGCC
AAAAAACGGG AAGAGGCGGA AAAATACTCC GCCGCGCGCC GCAATCTCAT CGGCTCCGGC
GGCCGTGAAG AAAAGATACG CACATACAAC TTCCCGCAGA ACCGTCTGAC AGACCACCGC
ATCGGCTACA CGTCCCACAA TCTGGACGGT ATCCTGATGG GGCAGCTGGA AGACCTGATT
ATGGCCCTCC AGCATGCGGA AATGCAGGAA CGCCTGGCGG AGGCCGGAAT GTCCTAA
 
Protein sequence
MDYTPLIEKR RQRLEELETV IAEPDFFNDQ KKASEIMREH RRLKELMETW DSLNATEQQL 
ADNQELAKTD DPELAELAAL EIPELEAALE KLRSDVQYSL LPRDTTEDRD AIIEIRAGTG
GDEASLFAGD LLRMYQRFAE ERGWRFEHLE SSPSDVGGFK EVVCRIAGEE VFRFLKYEGG
VHRVQRVPAT ETQGRIHTST ATVAVMPEAE EVDIEIRPED LRIEVCRSGG AGGQHVNKTE
SAVQIWHIPT GVYVRCEEER SQMKNREKGM KILRAKLFEA KKREEAEKYS AARRNLIGSG
GREEKIRTYN FPQNRLTDHR IGYTSHNLDG ILMGQLEDLI MALQHAEMQE RLAEAGMS