Gene Bphy_7110 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphy_7110 
Symbol 
ID6248621 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phymatum STM815 
KingdomBacteria 
Replicon accessionNC_010625 
Strand
Start bp1771437 
End bp1773521 
Gene Length2085 bp 
Protein Length694 aa 
Translation table11 
GC content67% 
IMG OID642598756 
Productdiguanylate cyclase/phosphodiesterase 
Protein accessionYP_001863158 
Protein GI186471840 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value0.0633557 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTACAGG GCAGCTACAA CAGTCTCCTC GTGCTGTTCT CGCTCCTTGT CGCGGTGCTG 
GCTGCGTACA CGTCGCTCGA AATGGCAGGC CGCATCACGA CGGCGACCGG CCGGACCGCG
CGCCTGTGGC TGACGGGCGG CGCGTTCGCG ATGGGACTGG GTATCTGGTC GATGCACTTC
ATCGGCATGC TCGCCTTCAG CCTGCCGATC CGGCTCGGCT ACGATCCCCT CGTCACGCTG
CTGTCGCTGT CGATCGCCGT CGCGTCGTCG GCGTTCGCGC TCTGGCTCGT GTGTCAGCAG
ACGCTGCCCG CCGGACGGCT CGTGGGCGGC GCGGTGCTGA TGGGTCTGGG CGTCGCGGGC
ATGCACTACA CGGGCATGGC GGCGCTGCGC ATGGAGCCCG GCATCGTCTA CGACGTGCCG
CTGTTCGCGC TGTCGATCGT CATTGCCGTC GCCGCTTCCG GTGTCGCGTT GAAGACGGCG
TTCAGCCTGC GTCACAACTC GCGCCGCATG CGGCCGCTGC GGGCGGGCGC CGCGATCGTG
ATGGGTCTCG CGATCGTCGG CATGCACTAC ACAGGTATGT CCGCCGCGGG ATTTCCGGCG
GGAAGCCTGT GCACGGCAGC GACGGAAGGT GTGAACGGCA CATGGCTCGC TCTTCTCATC
ATTGTCGTGA CGCTGGCGGT GACGGCCGTC GCGCTGACTA TTTCGCTGCT CGAAGATCTG
CGCCTCGAAA CGGAGAACGC GGCGCTCACC CGTTCGCTCG CGGAGGCGAA CCAGGAACTC
GGCTATCTGG CTTTGCACGA CGCGTTGACC AAGCTGCCGA ACCGCGTCTT GCTGGAGGGC
CGGCTCGAAG AAGCCCTGGC CCGCGCGCGC TCGGACGGCG GCGAATTCGC GCTGATGTTC
ATGGATCTCG ACGGCTTCAA GGTAGTCAAC GACGCCTACG GCCATCAGGT CGGCGACCGA
CTGCTGGTGC AGGTAGCCGA ACGGCTCGCA TCGGCCGTGC GCGGAAACGA CACGCTGGCG
CGCGTCGGCG GCGACGAGTT CGTGCTGCTC GTTCCCGACG AGGGCCGCGC GGGGGCGACG
ATCATTGCGG GTCGGTTGCT CGCGGCCATC GGCGCGCCGT TCGATGTGGA CGGCCACGAC
TTGCGGATTT CAACCAGCAT CGGCATCGCG ATGTGTCCAG CCGACGGCGC GCTGGTGCAC
GACGCGCTGA TGCACGCCGA CGCCGCGATG TATCACGCGA AGTCGATGGG CCGCAACGCG
CATTGCTTCT TCGACGCGTC GATGAACGAG AACATGCAGT GCCAGCTGCA ACTCACGCAG
GATCTGCGCG CGGCCCTCGA GCGCAACGAA CTGGTGTTGC ACTATCAGCC GCAATTCGCC
GCGCCGGACG GACCGATCAC GGGCGTCGAG GCGCTGGTGC GCTGGGCGCA TCCGAAGCGG
GGCATGATCG GCCCCGACGA ATTTATTCCG CTCGCCGAAA AAACCGGGCT GATCGTGCCG
ATCGGCGAAT GGGTGCTCGA CGAAGCGTGC CGTCAGGTCC GCGAATGGCT CGATACGGGC
GCGTGCGACT GGAACGTCGC CGTCAACCTG TCGCCTGTGC AGTTCAGCCA CCCGCAACTG
ACGGCGCTGG TGCGCGACAC GCTCGCGCGG CATCGCGTCG ATCCGCGTCA CCTGACGATC
GAGGTGACCG AGTCGGCCGC AATGCGCGAC GTCGAGGCAA GTCTGCGCAT TTTGCAAGCG
CTGCACGAGA TGGGCGTGCG CATCTCCATC GACGATTTCG GCACCGGCTA CTCGAGCCTG
ATGTACCTGA AGCGGCTGCC CGCGAGCGAA CTCAAGATCG ACCGCGGCTT CGTGCGCGAG
CTGGCGCACG ACGCGGAGGA TGCCGCTATC GTGTCGTCCG TCGTCGCGCT GGGGCATACG
CTCGGGATCG ATATCGTGGC GGAAGGCGTC GAGACCGCGA CGCAGAAGGA GTTTCTGACG
CGGCTTGGCT GCAATTCGCT GCAAGGCTAC CTGCTCGGAC GACCGGTTCC GGCCGCGGAC
CTGGGCGCGC TGTCGCGGGA GCCTGCGCGG GCGAGCGTGT CGTGA
 
Protein sequence
MLQGSYNSLL VLFSLLVAVL AAYTSLEMAG RITTATGRTA RLWLTGGAFA MGLGIWSMHF 
IGMLAFSLPI RLGYDPLVTL LSLSIAVASS AFALWLVCQQ TLPAGRLVGG AVLMGLGVAG
MHYTGMAALR MEPGIVYDVP LFALSIVIAV AASGVALKTA FSLRHNSRRM RPLRAGAAIV
MGLAIVGMHY TGMSAAGFPA GSLCTAATEG VNGTWLALLI IVVTLAVTAV ALTISLLEDL
RLETENAALT RSLAEANQEL GYLALHDALT KLPNRVLLEG RLEEALARAR SDGGEFALMF
MDLDGFKVVN DAYGHQVGDR LLVQVAERLA SAVRGNDTLA RVGGDEFVLL VPDEGRAGAT
IIAGRLLAAI GAPFDVDGHD LRISTSIGIA MCPADGALVH DALMHADAAM YHAKSMGRNA
HCFFDASMNE NMQCQLQLTQ DLRAALERNE LVLHYQPQFA APDGPITGVE ALVRWAHPKR
GMIGPDEFIP LAEKTGLIVP IGEWVLDEAC RQVREWLDTG ACDWNVAVNL SPVQFSHPQL
TALVRDTLAR HRVDPRHLTI EVTESAAMRD VEASLRILQA LHEMGVRISI DDFGTGYSSL
MYLKRLPASE LKIDRGFVRE LAHDAEDAAI VSSVVALGHT LGIDIVAEGV ETATQKEFLT
RLGCNSLQGY LLGRPVPAAD LGALSREPAR ASVS