Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphy_7023 |
Symbol | |
ID | 6248538 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phymatum STM815 |
Kingdom | Bacteria |
Replicon accession | NC_010625 |
Strand | - |
Start bp | 1684626 |
End bp | 1686527 |
Gene Length | 1902 bp |
Protein Length | 633 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 642598673 |
Product | type VI secretion protein |
Protein accession | YP_001863075 |
Protein GI | 186471757 |
COG category | [S] Function unknown |
COG ID | [COG3519] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR03359] type VI secretion protein, VC_A0110 family |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATCCGC GCACGCTTGA GTTCTACACG CGCGAGCTTC GCTTCCAGCG CGCGATGGCA TCGGAATTTG CTGCTGACCA TCTGAAGATC GCAAGGCGCC TTGGCATGGA GGCGGGCGAC ATTGGCGATC CTTATGTCGA GCGCCTTGTT CAAGGCTCCG CCTTTGTGAA CGCGCGCATC CAGATGCGCT TCGACGATGA ATTCCCGCAG CTCACCCAGG CGCTGCTTTC CTGCGTCTAT CCCAACTACC TCCTGCCCAC GCCATCCATC GCCGTGGCGC GGTTCTATCC GGGCGGCAAG GCGGGCGACC TCGTGTCCGG TCACCGCATC ACGCGCGGCA CCCTCGCCAC CTCGAAACTT CCCGAGGGCG AGAAGACGCC CTGCCAGTTT TCCCTTTGTC ACGACGTCAC GCTGTATCCG CTTGAGATCA GCTTCGCGAA GCTGGGCGGC ATTCCGCCCG ACATCTACGG CATGGACCGT TTCGTGCCAC CGCACCGGCG TGTACACGGC GGGTTGCGCC TGCGTATCCG CACAACCGGC GATGTACCGG TGGCAAGCCT GCAGGGACTG GACAGGCTGC CCGTCTGCCT GGCGGGCGAC GCGAAGCTCG CCTCGCACCT GCACGAGCTC ATTCACACGG CCGCGATTGC CACTGTGGCC GGCGAGCCGG GGCGGTTCAG TGAGGCCGGG TATGCATACC ACACCGTCAC CTCGAATGCC GTGATCCAGG AGGGGATTGG CCCAGAGGAG AGCGTCCTGC CGCTTGCCTC GCGAAAGTTT CTCGGCCACA ACCTCGTGCA CGAGTATTTC GCGTGCCCCG AGCGCTTTTA CTTCTTCACG CTCACCGGTC TCGCGGCGGG GCTGCGGAAC ATCAGCGGCC ATGAAGCCGA GATCGTGGTC CTGCTGGATC GTCCTGCGGG AGATCTGGCG GACCGTGTCG ATGCGTCGAT GTTCGCACTG TTCTGTGCCC CCGTGATCAA CCTCTTTCCC CTGCGCACCG AAAGCATGCC GATCCGCGAA GGTGCCCCGG AAACGCACAT TGTGCCGGTG GAGAAGCGGC CACTCGACTT CGAACTGCAC TCACTGGAGC GTGTGCTTGG GCAGGTTACC GAAGAGTCGG AGGTGCTGGA ATTCCGTCCG CTGCACCAGG CGCTGATGCG CGACGAAGAC AGTCACGGGC GTTACTTCAC GGTACGGCGC GAGCAGCACC TCGCCCCGGG CCAGTCCCGC CGGTACGGCA CACACTCGAC GTATGTCAGC ACGGAGTCGT TCCTGCAGCT CGTTGGGCCG GATGGTGAAC CGTACGACAA CGGTGACGAC GGCGAGATCC ACTTCGTGTC GGTGCAGGCG TGGGTGACCA ACCGCGACCT GCCCAGCCTG CTGCGCTGCA ATGGCGTGCG CGACCTGGAT CTGCGCCAGT CGGCACCGGT CTCGAGTATC GGTCTGATCC GGCCACCTGG CAGACCCAAA GCGCCGTTCG CTCAGGGCAT CAAGGCCTGG CAACTGCTGA TGCACCTCGA TATCGATCAT TCGGTCTTCG ATGACCGGTA CGACGAGCCG CACCCGGGCG AAGGGTTGCA AAGTTTTCTG CGGCTTTATC TCTCCGACGA CGCCGTGGCG CATCGCCGGC AGGTCGAGAG CCTTACCGCA GCGACGCTCA CGCCGGTCAA CCGGATCATC CCGAACCAGC AGCCACCGGT GGCGCGGGTG CTCGAATGCG GCATCACGGT CGACGAAAGC GGCTTCGATG GCGCGAGCCC CTATGTCTTT GGTCTCGTGC TTGAGCACTA CCTGGCCCGG CACGTTTCGA TGCATTCGTA CACGGCGATC GTGCTGGATT CGAAGCAGCG CGGGCGTATT GCGCAGTGGC CACCCCGACC GGGTACACGC AGCGTGGTGT AG
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Protein sequence | MDPRTLEFYT RELRFQRAMA SEFAADHLKI ARRLGMEAGD IGDPYVERLV QGSAFVNARI QMRFDDEFPQ LTQALLSCVY PNYLLPTPSI AVARFYPGGK AGDLVSGHRI TRGTLATSKL PEGEKTPCQF SLCHDVTLYP LEISFAKLGG IPPDIYGMDR FVPPHRRVHG GLRLRIRTTG DVPVASLQGL DRLPVCLAGD AKLASHLHEL IHTAAIATVA GEPGRFSEAG YAYHTVTSNA VIQEGIGPEE SVLPLASRKF LGHNLVHEYF ACPERFYFFT LTGLAAGLRN ISGHEAEIVV LLDRPAGDLA DRVDASMFAL FCAPVINLFP LRTESMPIRE GAPETHIVPV EKRPLDFELH SLERVLGQVT EESEVLEFRP LHQALMRDED SHGRYFTVRR EQHLAPGQSR RYGTHSTYVS TESFLQLVGP DGEPYDNGDD GEIHFVSVQA WVTNRDLPSL LRCNGVRDLD LRQSAPVSSI GLIRPPGRPK APFAQGIKAW QLLMHLDIDH SVFDDRYDEP HPGEGLQSFL RLYLSDDAVA HRRQVESLTA ATLTPVNRII PNQQPPVARV LECGITVDES GFDGASPYVF GLVLEHYLAR HVSMHSYTAI VLDSKQRGRI AQWPPRPGTR SVV
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