Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphy_5982 |
Symbol | |
ID | 6247553 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phymatum STM815 |
Kingdom | Bacteria |
Replicon accession | NC_010625 |
Strand | + |
Start bp | 513996 |
End bp | 515765 |
Gene Length | 1770 bp |
Protein Length | 589 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 642597689 |
Product | type VI secretion protein |
Protein accession | YP_001862091 |
Protein GI | 186470773 |
COG category | [S] Function unknown |
COG ID | [COG3519] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR03359] type VI secretion protein, VC_A0110 family |
| ![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_cp.jpg)
![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_hh.jpg)
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGGCTG ACATGGCGCC CGACGACATC CTGCAATACT ACAAACGCGA ACTGTCGTAC CTGCGTCTGC AAGGCGCGGA CTTCGCACGC CGCTATCCGA AGATTGCATC GCGGCTCGCG TTGCACGGCA CGGAATCGCT CGACCCGCAC ACGGAGCGGC TGATCGAAGC GACGGCGTTT CTCGCTGCTC GCGTGCACCG CGATCTCGAT CAGGAATTCC CGCAGGTCGC GTCAGCGCTG CTCGACAACG TGTGTCCCTC GCTCGTACAA CCCGTGCCAT CGATGACCGT CGCGCAGTTC GATCTCGATC CGACTCAGGG CAAAGTGACG GCGGGTTTTC TGGTGCCGCG TCACACCGGA CTGCAGGCGC GCACGGAAAC AGGCGATACG TGCCGCTTCC GCAGTGCATG GGACGCGGTG CTGTGGCCGC TGAAGATCAG TCATGCCGCA TTCGGTGACG ATGCGACGCT GCGGCTCACG CTTGAGTGCG CGCCGGGCGT CGACTTTTCC GAGCTGGAAC TGAAGCAACT ACGCATTCAC CTCCACGGCG ACTGGATGGT CACGATGCCG CTCTATGAAT TGCTGGTGTC GGGTGTTGCG GACGTGTCGG TGCGGCCCGA AGGCCGTCCG TCGGCGTCGC TGCTGCCAGC GCGTGCGTGG CGCGAAGTCG GGTATGCGCA AGCCGACGAT GTGCTGCCGC GCCCACCCAA TGCACAGCCG GCCTATTCGC TGATGCAGGA ATACTTCGCC TTCCCGCGCA AGTTCCATTT CTTCGATCTT CATCACCTGG AAGGCCGGCT AGGATCGGGG CGCCGCTGCG AAGTCGTGTT TCATCTTGAC CGTTCGCCGC GCGGCCTCGG CATGCTGCGC GCTGAACATT TTCAGCTTGG CTGCACGCCC ATTGTCAATC TGTTCTCGCA GACGAGCGAG CCGATCGTCA TCGACCATCG GCACTATGAA TACCGGCTCG TCGCCGATCA TCGCCGCGAG TCGATGACGG AAATCCATTC GGTTGCATCC GTCGTCGCGT CGGACCCGTC GACCGATCGC GTTGAGCACG TGCCGTGCTT TTCCGCGATC GATCATGTTC ACACGGACGG CAACACCGTT TTCTGGTCGG CGCGACGCGA ACACAGCCTG CGCGAAAACG TCCATGGAAC GGACACGTTC CTGAGTTTCG TCAATGCCGC CAACACGCAA AGCGATCCCG GCACGCCCGT CATTTACGCG AACGTGCTGT GCACGAACCG CCGGCTTGCG GAACAGGTGC CCGTGGGCGC GCGCATGCTG CTCGAAAAGG TGTCGCAGAA CACCCGTGTT CGCTGCCTTT ACGAACCGAC AGCGCAGCGC AGTCCTTCGC TCGGTAGCGA GACCTTGTGG CGGCTGATTT CGCTGCTCAC GCTCAACTAT CACTCGCTGG TGAGCGGCGC GACGGGACGC GCGCAATTGC AGGAGATGCT GCGGCTTTTC GCGTCCGAGA GCACGCGCGA GCAGGACCAG ATTCGCGGCA TCCGCAGTGT AGAAGCGCGC AGCGTCACCG CGCACGTCGG CAGCGACGCG TGGCGCGGCT ATTGCCGCGG CACCGAAGTC GCGGTCGAGT TCGACCCGGA GACCTTCGTC GGCGGTTCGC CTTTGCTGCT GGGCGCCGTG CTCGCGCGTT TCTTTGCGAT GTACACGTCG GTCAATTCAT TTGTACGGCT GGTGGTGCGC CGTGGAGACG AGACATGGAA GCAATGGGAG CCGATGACGG GCTGCCAGCA GTTGCTCTGA
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Protein sequence | MKADMAPDDI LQYYKRELSY LRLQGADFAR RYPKIASRLA LHGTESLDPH TERLIEATAF LAARVHRDLD QEFPQVASAL LDNVCPSLVQ PVPSMTVAQF DLDPTQGKVT AGFLVPRHTG LQARTETGDT CRFRSAWDAV LWPLKISHAA FGDDATLRLT LECAPGVDFS ELELKQLRIH LHGDWMVTMP LYELLVSGVA DVSVRPEGRP SASLLPARAW REVGYAQADD VLPRPPNAQP AYSLMQEYFA FPRKFHFFDL HHLEGRLGSG RRCEVVFHLD RSPRGLGMLR AEHFQLGCTP IVNLFSQTSE PIVIDHRHYE YRLVADHRRE SMTEIHSVAS VVASDPSTDR VEHVPCFSAI DHVHTDGNTV FWSARREHSL RENVHGTDTF LSFVNAANTQ SDPGTPVIYA NVLCTNRRLA EQVPVGARML LEKVSQNTRV RCLYEPTAQR SPSLGSETLW RLISLLTLNY HSLVSGATGR AQLQEMLRLF ASESTREQDQ IRGIRSVEAR SVTAHVGSDA WRGYCRGTEV AVEFDPETFV GGSPLLLGAV LARFFAMYTS VNSFVRLVVR RGDETWKQWE PMTGCQQLL
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